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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: TNPO1

Summary

GeneID

3842

Symbol

TNPO1

Synonyms

IPO2|KPNB2|MIP|MIP1|TRN

Description

transportin 1

Locus tag

Gene type

protein-coding

Map location

5q13.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Expression

P value: 1.491

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IPI

10353245

GO:0008565

protein transporter activity

IEA

GO:0008139

nuclear localization sequence binding

TAS

8808633

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000059

protein import into nucleus, docking

IEA

GO:0000060

protein import into nucleus, translocation

TAS

9144189

GO:0044419

interspecies interaction between organisms

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

TAS

9144189

GO:0005643

nuclear pore

IEA

GO:0005737

cytoplasm

TAS

9144189

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
ELAVL1	ELAV1 \| HUR \| Hua \| MelG	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	-	HPRD	15037768 \|15342649
HIST2H2BE	GL105 \| H2B \| H2B.1 \| H2B/q \| H2BFQ \| MGC119802 \| MGC119804 \| MGC129733 \| MGC129734	histone cluster 2, H2be	-	HPRD	11824786
HIST3H3	H3.4 \| H3/g \| H3FT \| H3t \| MGC126886 \| MGC126888	histone cluster 3, H3	-	HPRD	11824786
HNRNPA1	HNRPA1 \| MGC102835	heterogeneous nuclear ribonucleoprotein A1	-	HPRD	9144189
NUP153	HNUP153 \| N153	nucleoporin 153kDa	-	HPRD	10202161
NUP214	CAIN \| CAN \| D9S46E \| MGC104525 \| N214	nucleoporin 214kDa	-	HPRD	9144189
NUP98	ADIR2 \| NUP196 \| NUP96	nucleoporin 98kDa	-	HPRD,BioGRID	9144189\|10875935
NXF1	DKFZp667O0311 \| MEX67 \| TAP	nuclear RNA export factor 1	-	HPRD	10668806
PABPN1	OPMD \| PAB2 \| PABP2	poly(A) binding protein, nuclear 1	-	HPRD,BioGRID	10688363
RAN	ARA24 \| Gsp1 \| TC4	RAN, member RAS oncogene family	-	HPRD,BioGRID	10353245
RANBP2	NUP358 \| TRP1 \| TRP2	RAN binding protein 2	-	HPRD	9144189
RGPD5	BS-63 \| DKFZp686I1842 \| RANBP2L1 \| RGP5	RANBP2-like and GRIP domain containing 5	-	HPRD,BioGRID	11774384 \|12905863
RPL23A	FLJ27455 \| MDA20	ribosomal protein L23a	Affinity Capture-Western in vitro	BioGRID	9687515 \|11682607
RPL5	MGC117339 \| MSTP030	ribosomal protein L5	-	HPRD,BioGRID	9687515
RPS7	-	ribosomal protein S7	-	HPRD,BioGRID	9687515
SRP19	-	signal recognition particle 19kDa	-	HPRD,BioGRID	11682607

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-1/206	2982	2989	1A,m8	hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
miR-101	5618	5625	1A,m8	hsa-miR-101	UACAGUACUGUGAUAACUGAAG
miR-101	5618	5625	1A,m8	hsa-miR-101	UACAGUACUGUGAUAACUGAAG
miR-103/107	1861	1868	1A,m8	hsa-miR-103^brain	AGCAGCAUUGUACAGGGCUAUGA
miR-103/107	1861	1868	1A,m8	hsa-miR-107^brain	AGCAGCAUUGUACAGGGCUAUCA
miR-128	1687	1693	1A	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
				hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
				hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
				hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-129-5p	272	279	1A,m8	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
miR-129-5p	272	279	1A,m8	hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-135	2818	2824	m8	hsa-miR-135a	UAUGGCUUUUUAUUCCUAUGUGA
				hsa-miR-135b	UAUGGCUUUUCAUUCCUAUGUG
				hsa-miR-135a	UAUGGCUUUUUAUUCCUAUGUGA
				hsa-miR-135b	UAUGGCUUUUCAUUCCUAUGUG
				hsa-miR-135a	UAUGGCUUUUUAUUCCUAUGUGA
				hsa-miR-135b	UAUGGCUUUUCAUUCCUAUGUG
miR-136	5162	5168	1A	hsa-miR-136	ACUCCAUUUGUUUUGAUGAUGGA
miR-136	5162	5168	1A	hsa-miR-136	ACUCCAUUUGUUUUGAUGAUGGA
miR-139	5620	5626	m8	hsa-miR-139^brain	UCUACAGUGCACGUGUCU
miR-139	5620	5626	m8	hsa-miR-139^brain	UCUACAGUGCACGUGUCU
miR-141/200a	3146	3152	m8	hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
				hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
				hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
				hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
miR-144	5619	5625	1A	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
				hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
				hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
				hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-145	5335	5341	m8	hsa-miR-145	GUCCAGUUUUCCCAGGAAUCCCUU
miR-149	3471	3477	m8	hsa-miR-149^brain	UCUGGCUCCGUGUCUUCACUCC
miR-181	1691	1697	m8	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
				hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
				hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
				hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-182	4873	4879	m8	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-194	2978	2984	1A	hsa-miR-194	UGUAACAGCAACUCCAUGUGGA
miR-203.1	1575	1581	1A	hsa-miR-203	UGAAAUGUUUAGGACCACUAG
miR-205	3199	3205	1A	hsa-miR-205	UCCUUCAUUCCACCGGAGUCUG
miR-205	3199	3205	1A	hsa-miR-205	UCCUUCAUUCCACCGGAGUCUG
miR-21	5546	5552	m8	hsa-miR-21^brain	UAGCUUAUCAGACUGAUGUUGA
miR-21	5546	5552	m8	hsa-miR-590	GAGCUUAUUCAUAAAAGUGCAG
miR-214	5551	5557	1A	hsa-miR-214^brain	ACAGCAGGCACAGACAGGCAG
				hsa-miR-214^brain	ACAGCAGGCACAGACAGGCAG
				hsa-miR-214^brain	ACAGCAGGCACAGACAGGCAG
miR-23	262	268	1A	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
				hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
				hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
				hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
				hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
				hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-25/32/92/363/367	5296	5303	1A,m8	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-26	3108	3115	1A,m8	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	3108	3115	1A,m8	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-27	1625	1631	1A	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
				hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
				hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
				hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
				hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
				hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-299-5p	108	115	1A,m8	hsa-miR-299-5p	UGGUUUACCGUCCCACAUACAU
miR-30-5p	1084	1090	1A	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
				hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-320	5383	5389	1A	hsa-miR-320	AAAAGCUGGGUUGAGAGGGCGAA
miR-323	1693	1699	1A	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-329	1148	1154	1A	hsa-miR-329^brain	AACACACCUGGUUAACCUCUUU
miR-330	3736	3742	m8	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-330	3736	3742	m8	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-363	4192	4198	1A	hsa-miR-363	AUUGCACGGUAUCCAUCUGUAA
miR-375	3214	3220	1A	hsa-miR-375	UUUGUUCGUUCGGCUCGCGUGA
miR-381	4490	4496	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-381	4490	4496	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-382	5353	5360	1A,m8	hsa-miR-382^brain	GAAGUUGUUCGUGGUGGAUUCG
miR-383	3225	3231	1A	hsa-miR-383^brain	AGAUCAGAAGGUGAUUGUGGCU
miR-410	3160	3166	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-410	3160	3166	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-450	272	278	1A	hsa-miR-450	UUUUUGCGAUGUGUUCCUAAUA
miR-455	1321	1328	1A,m8	hsa-miR-455	UAUGUGCCUUUGGACUACAUCG
miR-485-3p	5364	5370	m8	hsa-miR-485-3p	GUCAUACACGGCUCUCCUCUCU
miR-485-3p	5364	5370	m8	hsa-miR-485-3p	GUCAUACACGGCUCUCCUCUCU
miR-488	210	216	1A	hsa-miR-488	CCCAGAUAAUGGCACUCUCAA
miR-494	5396	5402	m8	hsa-miR-494^brain	UGAAACAUACACGGGAAACCUCUU
miR-500	5295	5301	1A	hsa-miR-500	AUGCACCUGGGCAAGGAUUCUG
miR-503	3084	3091	1A,m8	hsa-miR-503	UAGCAGCGGGAACAGUUCUGCAG
miR-543	82	88	1A	hsa-miR-543	AAACAUUCGCGGUGCACUUCU
				hsa-miR-543	AAACAUUCGCGGUGCACUUCU
				hsa-miR-543	AAACAUUCGCGGUGCACUUCU
miR-544	1937	1943	m8	hsa-miR-544	AUUCUGCAUUUUUAGCAAGU
miR-544	1937	1943	m8	hsa-miR-544	AUUCUGCAUUUUUAGCAAGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.