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GeneID |
4009
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Symbol |
LMX1A
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Synonyms |
LMX-1|LMX1|LMX1.1|MGC87616
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Description |
LIM homeobox transcription factor 1, alpha |
See related |
HGNC:6653|MIM:600298|Ensembl:ENSG00000162761|HPRD:02623| |
Locus tag |
- |
Gene type |
protein-coding |
Map location |
1q22-q23 |
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Gene set name |
Method of gene set |
Evidence |
Info |
GO_Annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 3 | |
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General Gene Expression (microarray) ? |
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Gene Expression in Brain Regions (new) |
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Top co-expressed genes in Brain Regions (new) |
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Gene | Pearson's Correlation | Spearman's Correlation | | |
Top 10 positively co-expressed genes |
ZNF276 | 0.92 | 0.92 | | |
TYK2 | 0.88 | 0.87 | | |
LRDD | 0.88 | 0.87 | | |
TUBGCP6 | 0.88 | 0.88 | | |
RHOT2 | 0.87 | 0.85 | | |
IDUA | 0.86 | 0.86 | | |
AC004410.1 | 0.86 | 0.87 | | |
MYO9B | 0.85 | 0.86 | | |
GIGYF1 | 0.85 | 0.87 | | |
RTEL1 | 0.85 | 0.83 | | |
Top 10 negatively co-expressed genes | AF347015.31 | -0.51 | -0.50 | | |
CLEC2B | -0.51 | -0.60 | | |
AF347015.21 | -0.50 | -0.56 | | |
C1orf54 | -0.49 | -0.54 | | |
GNG11 | -0.49 | -0.56 | | |
GIMAP2 | -0.48 | -0.50 | | |
CARD16 | -0.48 | -0.51 | | |
B2M | -0.48 | -0.44 | | |
NMI | -0.47 | -0.49 | | |
LY96 | -0.47 | -0.56 | | |
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Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
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GO:0003677 | DNA binding | IEA | | - |
GO:0003700 | transcription factor activity | IEA | | - |
GO:0008270 | zinc ion binding | IEA | | - |
GO:0046872 | metal ion binding | IEA | | - |
GO:0043565 | sequence-specific DNA binding | IEA | | - |
Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
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GO:0007417 | central nervous system development | IEA | Brain (GO term level: 6) | - |
GO:0007411 | axon guidance | IEA | axon (GO term level: 13) | - |
GO:0045665 | negative regulation of neuron differentiation | IEA | neuron (GO term level: 10) | - |
GO:0006355 | regulation of transcription, DNA-dependent | IEA | | - |
GO:0007275 | multicellular organismal development | IEA | | - |
Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
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GO:0005634 | nucleus | IEA | | - |
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- SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
- Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.
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