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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: TRIM37

Summary

GeneID

4591

Symbol

TRIM37

Synonyms

KIAA0898|MUL|POB1|TEF3

Description

tripartite motif-containing 37

Locus tag

Gene type

protein-coding

Map location

17q23.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0074

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IPI

16189514

GO:0008270

zinc ion binding

IEA

GO:0046872

metal ion binding

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005622

intracellular

IEA

GO:0005737

cytoplasm

IEA

GO:0005777

peroxisome

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
APEX2	APE2 \| APEXL2 \| XTH2	APEX nuclease (apurinic/apyrimidinic endonuclease) 2	Two-hybrid	BioGRID	16189514
BYSL	BYSTIN	bystin-like	Two-hybrid	BioGRID	16189514
COPB1	COPB \| DKFZp761K102 \| FLJ10341	coatomer protein complex, subunit beta 1	Two-hybrid	BioGRID	16189514
DLGAP5	DLG1 \| DLG7 \| HURP \| KIAA0008	discs, large (Drosophila) homolog-associated protein 5	Two-hybrid	BioGRID	16189514
EWSR1	EWS	Ewing sarcoma breakpoint region 1	Two-hybrid	BioGRID	16189514
FAM107A	DRR1 \| FLJ30158 \| FLJ45473 \| TU3A	family with sequence similarity 107, member A	Two-hybrid	BioGRID	16189514
FAM124B	FLJ22746	family with sequence similarity 124B	Two-hybrid	BioGRID	16189514
FXR2	FMR1L2	fragile X mental retardation, autosomal homolog 2	Two-hybrid	BioGRID	16189514
KIAA0408	FLJ43995 \| RP3-403A15.2	KIAA0408	Two-hybrid	BioGRID	16189514
MAGEB18	MGC33889	melanoma antigen family B, 18	Two-hybrid	BioGRID	16189514
MCM10	CNA43 \| DNA43 \| MGC126776 \| PRO2249	minichromosome maintenance complex component 10	Two-hybrid	BioGRID	16189514
MCRS1	ICP22BP \| INO80Q \| MCRS2 \| MSP58 \| P78	microspherule protein 1	Two-hybrid	BioGRID	16189514
NUDT18	FLJ22494	nudix (nucleoside diphosphate linked moiety X)-type motif 18	Two-hybrid	BioGRID	16189514
PBK	FLJ14385 \| Nori-3 \| SPK \| TOPK	PDZ binding kinase	Two-hybrid	BioGRID	16189514
PNKP	PNK	polynucleotide kinase 3'-phosphatase	Two-hybrid	BioGRID	16189514
PRC1	ASE1 \| MGC1671 \| MGC3669	protein regulator of cytokinesis 1	Affinity Capture-Western Two-hybrid	BioGRID	16189514
RHPN1	KIAA1929 \| ODF5 \| RHOPHILIN \| RHPN	rhophilin, Rho GTPase binding protein 1	Two-hybrid	BioGRID	16189514
RIBC2	C22orf11	RIB43A domain with coiled-coils 2	Two-hybrid	BioGRID	16189514
TCEB3B	ELOA2 \| HsT832 \| MGC119351 \| TCEB3L	transcription elongation factor B polypeptide 3B (elongin A2)	Two-hybrid	BioGRID	16189514
TRAF1	EBI6 \| MGC:10353	TNF receptor-associated factor 1	-	HPRD,BioGRID	11279055
TRAF2	MGC:45012 \| TRAP \| TRAP3	TNF receptor-associated factor 2	-	HPRD,BioGRID	11279055
TRAF3	CAP-1 \| CD40bp \| CRAF1 \| LAP1	TNF receptor-associated factor 3	-	HPRD,BioGRID	11279055
TRAF4	CART1 \| MLN62 \| RNF83	TNF receptor-associated factor 4	-	HPRD,BioGRID	11279055
TRAF5	MGC:39780 \| RNF84	TNF receptor-associated factor 5	-	HPRD,BioGRID	11279055
TRAF6	MGC:3310 \| RNF85	TNF receptor-associated factor 6	-	HPRD,BioGRID	11279055
ZNF417	MGC34079	zinc finger protein 417	Two-hybrid	BioGRID	16189514
ZNF655	DKFZp686M1631 \| FLJ23461 \| MGC10859 \| MGC16203 \| MGC5521 \| VIK \| VIK-1	zinc finger protein 655	Two-hybrid	BioGRID	16189514

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS	138	98	All SZGR genes in this pathway
REACTOME_IMMUNE_SYSTEM	933	616	All SZGR genes in this pathway
REACTOME_ADAPTIVE_IMMUNE_SYSTEM	539	350	All SZGR genes in this pathway
REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION	251	156	All SZGR genes in this pathway
REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION	212	129	All SZGR genes in this pathway
IGARASHI_ATF4_TARGETS_DN	90	65	All SZGR genes in this pathway
DAVICIONI_MOLECULAR_ARMS_VS_ERMS_UP	332	228	All SZGR genes in this pathway
TIEN_INTESTINE_PROBIOTICS_6HR_DN	167	100	All SZGR genes in this pathway
GOZGIT_ESR1_TARGETS_DN	781	465	All SZGR genes in this pathway
MARKEY_RB1_CHRONIC_LOF_UP	115	78	All SZGR genes in this pathway
MARKEY_RB1_ACUTE_LOF_DN	228	137	All SZGR genes in this pathway
WANG_ESOPHAGUS_CANCER_VS_NORMAL_DN	101	66	All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_DN	855	609	All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN	483	336	All SZGR genes in this pathway
NUYTTEN_EZH2_TARGETS_DN	1024	594	All SZGR genes in this pathway
NIKOLSKY_BREAST_CANCER_17Q21_Q25_AMPLICON	335	181	All SZGR genes in this pathway
LEI_MYB_TARGETS	318	215	All SZGR genes in this pathway
BROWN_MYELOID_CELL_DEVELOPMENT_DN	129	86	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_DN	1237	837	All SZGR genes in this pathway
RAMASWAMY_METASTASIS_UP	66	43	All SZGR genes in this pathway
BAELDE_DIABETIC_NEPHROPATHY_DN	434	302	All SZGR genes in this pathway
GAZIN_EPIGENETIC_SILENCING_BY_KRAS	26	16	All SZGR genes in this pathway
ZHANG_BREAST_CANCER_PROGENITORS_UP	425	253	All SZGR genes in this pathway
KIM_ALL_DISORDERS_OLIGODENDROCYTE_NUMBER_CORR_UP	756	494	All SZGR genes in this pathway
KIM_BIPOLAR_DISORDER_OLIGODENDROCYTE_DENSITY_CORR_UP	682	440	All SZGR genes in this pathway
KIM_ALL_DISORDERS_CALB1_CORR_UP	548	370	All SZGR genes in this pathway
FEVR_CTNNB1_TARGETS_DN	553	343	All SZGR genes in this pathway
PLASARI_TGFB1_TARGETS_10HR_DN	244	157	All SZGR genes in this pathway
FARMER_BREAST_CANCER_CLUSTER_5	18	11	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-29	58	64	m8	hsa-miR-29a^SZ	UAGCACCAUCUGAAAUCGGUU
				hsa-miR-29b^SZ	UAGCACCAUUUGAAAUCAGUGUU
				hsa-miR-29c^SZ	UAGCACCAUUUGAAAUCGGU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.