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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: ASTN1

Summary

GeneID

460

Symbol

ASTN1

Synonyms

ASTN|KIAA1747

Description

astrotactin 1

Locus tag

Gene type

protein-coding

Map location

1q25.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

ZFHX4

0.83

0.70

ZNF521

0.81

0.54

IL28RA

0.81

0.45

SH2D3A

0.80

0.40

FAM83G

0.80

0.56

FOXP2

0.80

0.58

SCML4

0.79

0.33

ALK

0.76

0.42

CACNA2D2

0.75

0.69

NKD2

0.75

0.56

Top 10 negatively co-expressed genes

TMEM54

-0.29

-0.46

COX4I2

-0.28

-0.50

C5orf53

-0.28

-0.48

COPZ2

-0.28

-0.50

DCN

-0.27

-0.44

AF347015.31

-0.27

-0.54

CHPT1

-0.27

-0.43

MYL3

-0.27

-0.56

CA4

-0.26

-0.45

HLA-F

-0.26

-0.38

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007158

neuron adhesion

NAS

neuron (GO term level: 5)

GO:0007155

cell adhesion

IEA

GO:0016477

cell migration

NAS

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005575

cellular_component

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-141/200a	983	990	1A,m8	hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
miR-141/200a	983	990	1A,m8	hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
miR-182	2845	2851	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-335	2926	2932	1A	hsa-miR-335^brain	UCAAGAGCAAUAACGAAAAAUGU
miR-96	2845	2851	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.