Gene Page: OPCML

Summary
GeneID  4978
Symbol  OPCML
Synonyms  OBCAM|OPCM
Description  opioid binding protein/cell adhesion molecule-like
See related  HGNC:8143|MIM:600632|Ensembl:ENSG00000183715|HPRD:07198|
Locus tag  -
Gene type  protein-coding
Map location  11q25
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 1 
NetworkShortest path distance of core genes in the Human protein-protein interaction networkContribution to shortest path in PPI network: 31 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
MAG0.950.90
CNP0.950.87
FA2H0.950.90
KLK60.930.88
ADAMTS40.930.91
PLP10.930.89
GJC20.930.86
PMP220.930.90
HSPA20.920.88
TF0.920.88
Top 10 negatively co-expressed genes
TRNAU1AP-0.53-0.66
NKIRAS2-0.53-0.60
TUBB2B-0.52-0.71
NR2C2AP-0.52-0.68
KIAA1949-0.51-0.63
AIM2-0.51-0.73
YBX1-0.51-0.68
HN1-0.51-0.59
ZNF821-0.50-0.61
IFT52-0.50-0.65
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIEA-
GO:0004985opioid receptor activityTAS1333602 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0008038neuron recognitionTASneuron (GO term level: 4)7891157 
GO:0007155cell adhesionTAS7721093 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005886plasma membraneTAS1333602 
GO:0005887integral to plasma membraneTAS1333602 
GO:0031225anchored to membraneIEA-
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
DELYS_THYROID_CANCER_UP 443294All SZGR genes in this pathway
PUJANA_ATM_PCC_NETWORK 1442892All SZGR genes in this pathway
STARK_PREFRONTAL_CORTEX_22Q11_DELETION_UP 195138All SZGR genes in this pathway
LOPES_METHYLATED_IN_COLON_CANCER_UP 2720All SZGR genes in this pathway
HARRIS_BRAIN_CANCER_PROGENITORS 4423All SZGR genes in this pathway
RIGGI_EWING_SARCOMA_PROGENITOR_UP 430288All SZGR genes in this pathway
YAGI_AML_WITH_INV_16_TRANSLOCATION 422277All SZGR genes in this pathway
MIKKELSEN_MEF_ICP_WITH_H3K4ME3_AND_H3K27ME3 3834All SZGR genes in this pathway
MIKKELSEN_IPS_ICP_WITH_H3K4ME3_AND_H327ME3 12683All SZGR genes in this pathway
MIKKELSEN_ES_ICP_WITH_H3K4ME3_AND_H3K27ME3 13785All SZGR genes in this pathway
KIM_ALL_DISORDERS_CALB1_CORR_UP 548370All SZGR genes in this pathway
GOBERT_CORE_OLIGODENDROCYTE_DIFFERENTIATION 4028All SZGR genes in this pathway
ZWANG_EGF_INTERVAL_UP 10546All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-13412091215m8hsa-miR-134brainUGUGACUGGUUGACCAGAGGG
miR-19039451Ahsa-miR-190UGAUAUGUUUGAUAUAUUAGGU
miR-194512051261Ahsa-miR-194UGUAACAGCAACUCCAUGUGGA
miR-19651015107m8hsa-miR-196aUAGGUAGUUUCAUGUUGUUGG
hsa-miR-196bUAGGUAGUUUCCUGUUGUUGG
miR-224163016361Ahsa-miR-224CAAGUCACUAGUGGUUCCGUUUA
miR-376c49424948m8hsa-miR-376cAACAUAGAGGAAAUUCCACG
miR-3792032091Ahsa-miR-379brainUGGUAGACUAUGGAACGUA
miR-452166516721A,m8hsa-miR-452UGUUUGCAGAGGAAACUGAGAC
hsa-miR-452UGUUUGCAGAGGAAACUGAGAC
miR-494158915951Ahsa-miR-494brainUGAAACAUACACGGGAAACCUCUU
miR-932423248m8hsa-miR-9SZUCUUUGGUUAUCUAGCUGUAUGA
miR-93.hd/291-3p/294/295/302/372/373/52016441650m8hsa-miR-93brainAAAGUGCUGUUCGUGCAGGUAG
hsa-miR-302aUAAGUGCUUCCAUGUUUUGGUGA
hsa-miR-302bUAAGUGCUUCCAUGUUUUAGUAG
hsa-miR-302cUAAGUGCUUCCAUGUUUCAGUGG
hsa-miR-302dUAAGUGCUUCCAUGUUUGAGUGU
hsa-miR-372AAAGUGCUGCGACAUUUGAGCGU
hsa-miR-373GAAGUGCUUCGAUUUUGGGGUGU
hsa-miR-520eAAAGUGCUUCCUUUUUGAGGG
hsa-miR-520aAAAGUGCUUCCCUUUGGACUGU
hsa-miR-520bAAAGUGCUUCCUUUUAGAGGG
hsa-miR-520cAAAGUGCUUCCUUUUAGAGGGUU
hsa-miR-520dAAAGUGCUUCUCUUUGGUGGGUU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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