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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: CCDC53

Summary

GeneID

51019

Symbol

CCDC53

Synonyms

CGI-116

Description

coiled-coil domain containing 53

Locus tag

Gene type

protein-coding

Map location

12q23.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0105

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003674

molecular_function

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0008150

biological_process

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005575

cellular_component

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
ABI2	ABI-2 \| ABI2B \| AIP-1 \| AblBP3 \| SSH3BP2 \| argBPIA \| argBPIB	abl interactor 2	Two-hybrid	BioGRID	16189514
GDF9	-	growth differentiation factor 9	Two-hybrid	BioGRID	16169070
HSBP1	DKFZp686D1664 \| DKFZp686O24200 \| NPC-A-13	heat shock factor binding protein 1	Two-hybrid	BioGRID	16189514
KRT6A	CK6A \| CK6C \| CK6D \| K6A \| K6C \| K6D \| KRT6C \| KRT6D	keratin 6A	Two-hybrid	BioGRID	16189514
LAMC1	LAMB2 \| MGC87297	laminin, gamma 1 (formerly LAMB2)	Two-hybrid	BioGRID	16169070
LUC7L2	CGI-59 \| CGI-74 \| FLJ10657 \| LUC7B2	LUC7-like 2 (S. cerevisiae)	Two-hybrid	BioGRID	16169070
MCRS1	ICP22BP \| INO80Q \| MCRS2 \| MSP58 \| P78	microspherule protein 1	Two-hybrid	BioGRID	16189514
NDC80	HEC \| HEC1 \| KNTC2 \| TID3 \| hsNDC80	NDC80 homolog, kinetochore complex component (S. cerevisiae)	Two-hybrid	BioGRID	16189514
NUP62	DKFZp547L134 \| FLJ20822 \| FLJ43869 \| IBSN \| MGC841 \| SNDI \| p62	nucleoporin 62kDa	Two-hybrid	BioGRID	16189514
OPTN	FIP2 \| GLC1E \| HIP7 \| HYPL \| NRP \| TFIIIA-INTP	optineurin	Two-hybrid	BioGRID	16189514
PBXIP1	HPIP	pre-B-cell leukemia homeobox interacting protein 1	Two-hybrid	BioGRID	16189514
PCM1	PTC4	pericentriolar material 1	Two-hybrid	BioGRID	16189514
PLDN	PA \| PALLID	pallidin homolog (mouse)	Two-hybrid	BioGRID	16189514
PTN	HARP \| HBGF8 \| HBNF \| NEGF1	pleiotrophin	Two-hybrid	BioGRID	16169070

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
DAVICIONI_MOLECULAR_ARMS_VS_ERMS_UP	332	228	All SZGR genes in this pathway
LIU_CMYB_TARGETS_UP	165	106	All SZGR genes in this pathway
LIU_VMYB_TARGETS_UP	127	78	All SZGR genes in this pathway
UDAYAKUMAR_MED1_TARGETS_DN	240	171	All SZGR genes in this pathway
HAHTOLA_MYCOSIS_FUNGOIDES_CD4_DN	116	71	All SZGR genes in this pathway
BERENJENO_TRANSFORMED_BY_RHOA_DN	394	258	All SZGR genes in this pathway
TERAMOTO_OPN_TARGETS_CLUSTER_5	7	5	All SZGR genes in this pathway
KIM_MYCN_AMPLIFICATION_TARGETS_DN	103	59	All SZGR genes in this pathway
NUYTTEN_NIPP1_TARGETS_UP	769	437	All SZGR genes in this pathway
SWEET_KRAS_TARGETS_UP	84	51	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_DN	1237	837	All SZGR genes in this pathway
BOYAULT_LIVER_CANCER_SUBCLASS_G6_UP	65	43	All SZGR genes in this pathway
CHIANG_LIVER_CANCER_SUBCLASS_CTNNB1_UP	176	110	All SZGR genes in this pathway
CAIRO_HEPATOBLASTOMA_CLASSES_DN	210	141	All SZGR genes in this pathway
MIKKELSEN_ES_ICP_WITH_H3K4ME3	718	401	All SZGR genes in this pathway
MIKKELSEN_NPC_ICP_WITH_H3K4ME3	445	257	All SZGR genes in this pathway
CHICAS_RB1_TARGETS_GROWING	243	155	All SZGR genes in this pathway
CHICAS_RB1_TARGETS_CONFLUENT	567	365	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_LATE	1137	655	All SZGR genes in this pathway
ZWANG_TRANSIENTLY_UP_BY_1ST_EGF_PULSE_ONLY	1839	928	All SZGR genes in this pathway