Gene Page: TRERF1

Summary
GeneID  55809
Symbol  TRERF1
Synonyms  BCAR2|FLJ21198|HSA277276|RAPA|RP1-139D8.5|TReP-132|dJ139D8.5
Description  transcriptional regulating factor 1
See related  HGNC:18273|MIM:610322|Ensembl:ENSG00000124496|HPRD:11647|
Locus tag  -
Gene type  protein-coding
Map location  6p21.1-p12.1
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.033 
GSMA_IIEgenome scan meta-analysis (European-ancestry samples)Psr: 0.04433 
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
SLC30A90.920.91
RAB2A0.910.90
USP330.910.91
SHOC20.910.91
ARMC10.910.92
ATF20.910.90
LRPPRC0.910.90
SCAMP10.900.92
UGCG0.900.89
UBQLN10.900.89
Top 10 negatively co-expressed genes
MT-CO2-0.76-0.73
FXYD1-0.74-0.75
AF347015.33-0.74-0.71
MT-CYB-0.74-0.71
AF347015.8-0.73-0.72
AF347015.31-0.72-0.70
HIGD1B-0.72-0.71
AF347015.2-0.72-0.69
AF347015.26-0.72-0.68
AF347015.21-0.71-0.69
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003700transcription factor activityIDA11349124 
GO:0008270zinc ion bindingIEA-
GO:0008301DNA bending activityNAS11349124 
GO:0008134transcription factor bindingIPI11349124 
GO:0016455RNA polymerase II transcription mediator activityNAS11349124 
GO:0030374ligand-dependent nuclear receptor transcription coactivator activityNAS11349124 
GO:0046872metal ion bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006350transcriptionIEA-
GO:0006707cholesterol catabolic processNAS11349124 
GO:0006694steroid biosynthetic processNAS11349124 
GO:0007275multicellular organismal developmentNAS11349124 
GO:0042592homeostatic processNAS11349124 
GO:0045893positive regulation of transcription, DNA-dependentIDA11349124 
GO:0046885regulation of hormone biosynthetic processNAS11349124 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005622intracellularIEA-
GO:0005634nucleusIDA11349124 
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
CREBBPCBP | KAT3A | RSTSCREB binding protein-HPRD,BioGRID11349124 
EP300KAT3B | p300E1A binding protein p300-HPRD,BioGRID11349124 
NR5A1AD4BP | ELP | FTZ1 | FTZF1 | SF-1 | SF1nuclear receptor subfamily 5, group A, member 1-HPRD,BioGRID12101186 
 
Pathway annotation
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-19697103m8hsa-miR-196aUAGGUAGUUUCAUGUUGUUGG
hsa-miR-196bUAGGUAGUUUCCUGUUGUUGG
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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