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GeneID |
55809
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Symbol |
TRERF1
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Synonyms |
BCAR2|FLJ21198|HSA277276|RAPA|RP1-139D8.5|TReP-132|dJ139D8.5
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Description |
transcriptional regulating factor 1 |
See related |
HGNC:18273|MIM:610322|Ensembl:ENSG00000124496|HPRD:11647| |
Locus tag |
- |
Gene type |
protein-coding |
Map location |
6p21.1-p12.1 |
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Gene set name |
Method of gene set |
Evidence |
Info |
GSMA_I | genome scan meta-analysis | Psr: 0.033 | | GSMA_IIE | genome scan meta-analysis (European-ancestry samples) | Psr: 0.04433 | | Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia] | Click to show detail |
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General Gene Expression (microarray) ? |
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Gene Expression in Brain Regions (new) |
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Top co-expressed genes in Brain Regions (new) |
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Gene | Pearson's Correlation | Spearman's Correlation | | |
Top 10 positively co-expressed genes |
SLC30A9 | 0.92 | 0.91 | | |
RAB2A | 0.91 | 0.90 | | |
USP33 | 0.91 | 0.91 | | |
SHOC2 | 0.91 | 0.91 | | |
ARMC1 | 0.91 | 0.92 | | |
ATF2 | 0.91 | 0.90 | | |
LRPPRC | 0.91 | 0.90 | | |
SCAMP1 | 0.90 | 0.92 | | |
UGCG | 0.90 | 0.89 | | |
UBQLN1 | 0.90 | 0.89 | | |
Top 10 negatively co-expressed genes | MT-CO2 | -0.76 | -0.73 | | |
FXYD1 | -0.74 | -0.75 | | |
AF347015.33 | -0.74 | -0.71 | | |
MT-CYB | -0.74 | -0.71 | | |
AF347015.8 | -0.73 | -0.72 | | |
AF347015.31 | -0.72 | -0.70 | | |
HIGD1B | -0.72 | -0.71 | | |
AF347015.2 | -0.72 | -0.69 | | |
AF347015.26 | -0.72 | -0.68 | | |
AF347015.21 | -0.71 | -0.69 | | |
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Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
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GO:0003700 | transcription factor activity | IDA | | 11349124 |
GO:0008270 | zinc ion binding | IEA | | - |
GO:0008301 | DNA bending activity | NAS | | 11349124 |
GO:0008134 | transcription factor binding | IPI | | 11349124 |
GO:0016455 | RNA polymerase II transcription mediator activity | NAS | | 11349124 |
GO:0030374 | ligand-dependent nuclear receptor transcription coactivator activity | NAS | | 11349124 |
GO:0046872 | metal ion binding | IEA | | - |
Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
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GO:0006350 | transcription | IEA | | - |
GO:0006707 | cholesterol catabolic process | NAS | | 11349124 |
GO:0006694 | steroid biosynthetic process | NAS | | 11349124 |
GO:0007275 | multicellular organismal development | NAS | | 11349124 |
GO:0042592 | homeostatic process | NAS | | 11349124 |
GO:0045893 | positive regulation of transcription, DNA-dependent | IDA | | 11349124 |
GO:0046885 | regulation of hormone biosynthetic process | NAS | | 11349124 |
Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
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GO:0005622 | intracellular | IEA | | - |
GO:0005634 | nucleus | IDA | | 11349124 |
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- SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
- Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.
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