|
GeneID |
56133
|
Symbol |
PCDHB2
|
Synonyms |
MGC111392|PCDH-BETA2
|
Description |
protocadherin beta 2 |
See related |
HGNC:8687|MIM:606328|Ensembl:ENSG00000112852|HPRD:07558| |
Locus tag |
- |
Gene type |
protein-coding |
Map location |
5q31 |
|
|
|
Gene set name |
Method of gene set |
Evidence |
Info |
GSMA_I | genome scan meta-analysis | Psr: 0.0032 | | GO_Annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 2 | |
|
|
General Gene Expression (microarray) ? |
|
|
|
Gene Expression in Brain Regions (new) |
|
|
Top co-expressed genes in Brain Regions (new) |
|
Gene | Pearson's Correlation | Spearman's Correlation | | |
Top 10 positively co-expressed genes |
ATHL1 | 0.78 | 0.82 | | |
C1orf175 | 0.74 | 0.75 | | |
COL16A1 | 0.73 | 0.76 | | |
MICALL2 | 0.72 | 0.72 | | |
ITIH4 | 0.72 | 0.77 | | |
COL5A3 | 0.72 | 0.77 | | |
LCN12 | 0.70 | 0.68 | | |
ADCY4 | 0.70 | 0.75 | | |
RGL3 | 0.67 | 0.68 | | |
ITGA7 | 0.67 | 0.71 | | |
Top 10 negatively co-expressed genes | TXNL1 | -0.49 | -0.56 | | |
MOBKL3 | -0.47 | -0.54 | | |
MRPL44 | -0.46 | -0.56 | | |
MMADHC | -0.46 | -0.53 | | |
TAF9 | -0.45 | -0.51 | | |
CCT4 | -0.45 | -0.53 | | |
MED19 | -0.45 | -0.51 | | |
EIF3M | -0.45 | -0.53 | | |
ASNSD1 | -0.45 | -0.51 | | |
METTL9 | -0.45 | -0.52 | | |
|
Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
---|
GO:0005509 | calcium ion binding | IEA | | - |
GO:0005515 | protein binding | NAS | | 11322959 |
Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
---|
GO:0007416 | synaptogenesis | TAS | Synap (GO term level: 6) | 12231349 |
GO:0007268 | synaptic transmission | TAS | neuron, Synap, Neurotransmitter (GO term level: 6) | 12231349 |
GO:0007155 | cell adhesion | TAS | | 10380929 |
GO:0007156 | homophilic cell adhesion | IEA | | - |
GO:0016339 | calcium-dependent cell-cell adhesion | NAS | | 11322959 |
Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
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GO:0005886 | plasma membrane | IEA | | - |
GO:0005887 | integral to plasma membrane | TAS | | 10380929 |
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