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GeneID |
56134
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Symbol |
PCDHAC2
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Synonyms |
MGC71598|PCDH-ALPHA-C2
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Description |
protocadherin alpha subfamily C, 2 |
See related |
HGNC:8677|MIM:606321|Ensembl:ENSG00000081842|HPRD:07331| |
Locus tag |
- |
Gene type |
protein-coding |
Map location |
5q31 |
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Gene set name |
Method of gene set |
Evidence |
Info |
GSMA_I | genome scan meta-analysis | Psr: 0.0032 | | GO_Annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 1 | |
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General Gene Expression (microarray) ? |
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Gene Expression in Brain Regions (new) |
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Top co-expressed genes in Brain Regions (new) |
|
Gene | Pearson's Correlation | Spearman's Correlation | | |
Top 10 positively co-expressed genes |
SNX10 | 0.91 | 0.90 | | |
GLRB | 0.90 | 0.84 | | |
ATP6V1C1 | 0.89 | 0.86 | | |
GHITM | 0.89 | 0.87 | | |
IDH3A | 0.89 | 0.88 | | |
ENPP5 | 0.89 | 0.89 | | |
MAPK10 | 0.88 | 0.89 | | |
KRT222P | 0.88 | 0.85 | | |
GOT1 | 0.88 | 0.90 | | |
NIPAL2 | 0.88 | 0.85 | | |
Top 10 negatively co-expressed genes | BCL7C | -0.53 | -0.58 | | |
SH3BP2 | -0.52 | -0.55 | | |
FADS2 | -0.52 | -0.45 | | |
SEMA4B | -0.51 | -0.45 | | |
NME4 | -0.51 | -0.62 | | |
PDE9A | -0.51 | -0.49 | | |
KIAA1949 | -0.51 | -0.38 | | |
SH2D2A | -0.50 | -0.53 | | |
TRAF4 | -0.50 | -0.51 | | |
TUBB2B | -0.50 | -0.49 | | |
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Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
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GO:0005509 | calcium ion binding | IEA | | - |
GO:0005515 | protein binding | IEA | | - |
Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
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GO:0007399 | nervous system development | TAS | neurite (GO term level: 5) | 10380929 |
GO:0007155 | cell adhesion | TAS | | 10380929 |
GO:0007156 | homophilic cell adhesion | IEA | | - |
Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
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GO:0005886 | plasma membrane | IEA | | - |
GO:0005887 | integral to plasma membrane | TAS | | 10380929 |
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- SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
- Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.
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