Gene Page

Gene Page: TRIM39

Summary

GeneID

56658

Symbol

TRIM39

Synonyms

MGC32984|RNF23|TFP|TRIM39B

Description

tripartite motif-containing 39

Locus tag

DAAP-385L22.4

Gene type

protein-coding

Map location

6p21.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.033

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003674

molecular_function

GO:0008270

zinc ion binding

IEA

GO:0042802

identical protein binding

IPI

16189514

GO:0046872

metal ion binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0008150

biological_process

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005575

cellular_component

GO:0005622

intracellular

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
DCUN1D1	DCUN1L1 \| RP42 \| SCCRO \| SCRO \| Tes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	Two-hybrid	BioGRID	16189514
PDLIM5	ENH \| ENH1 \| L9 \| LIM	PDZ and LIM domain 5	Two-hybrid	BioGRID	16189514
PLCD4	MGC12837	phospholipase C, delta 4	Two-hybrid	BioGRID	16189514
TRIM17	RBCC \| RNF16 \| terf	tripartite motif-containing 17	Two-hybrid	BioGRID	16189514
TRIM39	MGC32984 \| RNF23 \| TFP \| TRIM39B	tripartite motif-containing 39	Affinity Capture-Western Two-hybrid	BioGRID	16189514
UBE2D1	E2(17)KB1 \| SFT \| UBC4/5 \| UBCH5 \| UBCH5A	ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast)	Two-hybrid	BioGRID	16189514
UBE2D3	E2(17)KB3 \| MGC43926 \| MGC5416 \| UBC4/5 \| UBCH5C	ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	Two-hybrid	BioGRID	16189514
UBE2D4	HBUCE1	ubiquitin-conjugating enzyme E2D 4 (putative)	Two-hybrid	BioGRID	16189514
UBTD1	FLJ11807	ubiquitin domain containing 1	Two-hybrid	BioGRID	16189514

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124.1	905	911	1A	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	1393	1399	m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	1393	1399	m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-181	1160	1166	1A	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-182	1241	1247	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-375	1448	1454	1A	hsa-miR-375	UUUGUUCGUUCGGCUCGCGUGA
miR-431	807	814	1A,m8	hsa-miR-431	UGUCUUGCAGGCCGUCAUGCA
miR-496	1162	1168	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-543	913	920	1A,m8	hsa-miR-543	AAACAUUCGCGGUGCACUUCU
miR-96	1241	1247	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.