Gene Page

Gene Page: ANKS1B

Summary

GeneID

56899

Symbol

ANKS1B

Synonyms

Description

ankyrin repeat and sterile alpha motif domain containing 1B

See related

HGNC:24600|MIM:607815|HPRD:07426|

Locus tag

Gene type

protein-coding

Map location

12q23.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 2

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.1108

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0042995

cell projection

IEA

axon (GO term level: 4)

GO:0045211

postsynaptic membrane

IEA

Synap, Neurotransmitter (GO term level: 5)

GO:0045202

synapse

IEA

neuron, Synap, Neurotransmitter, Glial (GO term level: 2)

GO:0005634

nucleus

IEA

GO:0005737

cytoplasm

IEA

GO:0005886

plasma membrane

IEA

GO:0030054

cell junction

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
COIL	CLN80 \| p80-coilin	coilin	AIDA-1c interacts with COIL.	BIND	15862129
COIL	CLN80 \| p80-coilin	coilin	AIDA-1a interacts with COIL.	BIND	15862129
LRP2	DBS \| gp330	low density lipoprotein-related protein 2	-	HPRD,BioGRID	12508107

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124/506	26	32	m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	26	32	m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-186	1147	1153	1A	hsa-miR-186	CAAAGAAUUCUCCUUUUGGGCUU
miR-208	1348	1354	1A	hsa-miR-208	AUAAGACGAGCAAAAAGCUUGU
miR-214	953	959	m8	hsa-miR-214^brain	ACAGCAGGCACAGACAGGCAG
miR-26	1511	1518	1A,m8	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	1511	1518	1A,m8	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-330	302	308	m8	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-34b	382	389	1A,m8	hsa-miR-34b	UAGGCAGUGUCAUUAGCUGAUUG
miR-381	682	688	m8	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-410	1227	1233	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-485-3p	1190	1196	m8	hsa-miR-485-3p	GUCAUACACGGCUCUCCUCUCU
miR-494	755	761	m8	hsa-miR-494^brain	UGAAACAUACACGGGAAACCUCUU
miR-494	755	761	m8	hsa-miR-494^brain	UGAAACAUACACGGGAAACCUCUU
miR-499	1348	1354	1A	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-543	707	713	m8	hsa-miR-543	AAACAUUCGCGGUGCACUUCU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.