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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: PCNP

Summary

GeneID

57092

Symbol

PCNP

Synonyms

DKFZp781I24156

Description

PEST proteolytic signal containing nuclear protein

Locus tag

Gene type

protein-coding

Map location

3q12.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.04359

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.04047

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IPI

12176013

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007049

cell cycle

IEA

GO:0016567

protein ubiquitination

IDA

14741369

GO:0043161

proteasomal ubiquitin-dependent protein catabolic process

IDA

14741369

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IDA

12176013

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
UHRF2	DKFZp434B0920 \| DKFZp686G0837 \| MGC33463 \| NIRF \| RNF107 \| URF2	ubiquitin-like with PHD and ring finger domains 2	-	HPRD	12176013 \|14741369

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
ONKEN_UVEAL_MELANOMA_DN	526	357	All SZGR genes in this pathway
THUM_SYSTOLIC_HEART_FAILURE_UP	423	283	All SZGR genes in this pathway
DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP	1382	904	All SZGR genes in this pathway
BENPORATH_MYC_MAX_TARGETS	775	494	All SZGR genes in this pathway
SHEN_SMARCA2_TARGETS_UP	424	268	All SZGR genes in this pathway
WANG_TUMOR_INVASIVENESS_DN	210	128	All SZGR genes in this pathway
MILI_PSEUDOPODIA_HAPTOTAXIS_UP	518	299	All SZGR genes in this pathway
DANG_BOUND_BY_MYC	1103	714	All SZGR genes in this pathway
LU_EZH2_TARGETS_DN	414	237	All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_2_DN	336	211	All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_3_DN	918	550	All SZGR genes in this pathway
MAEKAWA_ATF2_TARGETS	24	19	All SZGR genes in this pathway
RAO_BOUND_BY_SALL4_ISOFORM_B	517	302	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-181	701	707	m8	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-200bc/429	693	699	m8	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-218	1063	1069	m8	hsa-miR-218^brain	UUGUGCUUGAUCUAACCAUGU
miR-365	502	508	m8	hsa-miR-365	UAAUGCCCCUAAAAAUCCUUAU
miR-410	176	182	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-421	763	769	1A	hsa-miR-421	GGCCUCAUUAAAUGUUUGUUG
miR-431	190	196	1A	hsa-miR-431	UGUCUUGCAGGCCGUCAUGCA
miR-9	681	687	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.