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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: ARID1B

Summary

GeneID

57492

Symbol

ARID1B

Synonyms

6A3-5|BAF250b|BRIGHT|DAN15|ELD/OSA1|KIAA1235|p250R

Description

AT rich interactive domain 1B (SWI1-like)

Locus tag

RP11-419L10.1

Gene type

protein-coding

Map location

6q25.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003677

DNA binding

IEA

GO:0003713

transcription coactivator activity

NAS

11734557

GO:0005515

protein binding

IPI

12200431

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006355

regulation of transcription, DNA-dependent

IEA

GO:0006350

transcription

IEA

GO:0016568

chromatin modification

IEA

GO:0048096

chromatin-mediated maintenance of transcription

NAS

11734557

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005622

intracellular

IEA

GO:0005634

nucleus

IEA

GO:0016514

SWI/SNF complex

IDA

11734557

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
RELB	I-REL \| IREL	v-rel reticuloendotheliosis viral oncogene homolog B	-	HPRD	14743216
SMARCA2	BAF190 \| BRM \| FLJ36757 \| MGC74511 \| SNF2 \| SNF2L2 \| SNF2LA \| SWI2 \| Sth1p \| hBRM \| hSNF2a	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	-	HPRD,BioGRID	12200431
SMARCA4	BAF190 \| BRG1 \| FLJ39786 \| SNF2 \| SNF2-BETA \| SNF2L4 \| SNF2LB \| SWI2 \| hSNF2b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	ELD/OSA1 interacts with BRG1.	BIND	11988099
SMARCA4			-	HPRD,BioGRID	11988099 \|12200431
SMARCB1	BAF47 \| INI1 \| RDT \| SNF5 \| SNF5L1 \| Sfh1p \| Snr1 \| hSNFS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	Affinity Capture-MS	BioGRID	11734557

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_DN	634	384	All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN	805	505	All SZGR genes in this pathway
PEREZ_TP53_TARGETS	1174	695	All SZGR genes in this pathway
PEREZ_TP63_TARGETS	355	243	All SZGR genes in this pathway
PEREZ_TP53_AND_TP63_TARGETS	205	145	All SZGR genes in this pathway
KIM_MYCN_AMPLIFICATION_TARGETS_DN	103	59	All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS	988	594	All SZGR genes in this pathway
BENPORATH_OCT4_TARGETS	290	172	All SZGR genes in this pathway
BENPORATH_SOX2_TARGETS	734	436	All SZGR genes in this pathway
BENPORATH_NOS_TARGETS	179	105	All SZGR genes in this pathway
MARIADASON_RESPONSE_TO_BUTYRATE_SULINDAC_6	52	32	All SZGR genes in this pathway
DOUGLAS_BMI1_TARGETS_UP	566	371	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-128	1370	1377	1A,m8	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
miR-128	1370	1377	1A,m8	hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-129-5p	952	958	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
				hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
				hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
				hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-142-5p	1320	1326	1A	hsa-miR-142-5p	CAUAAAGUAGAAAGCACUAC
miR-25/32/92/363/367	489	496	1A,m8	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-27	1371	1377	m8	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	1371	1377	m8	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-329	194	200	1A	hsa-miR-329^brain	AACACACCUGGUUAACCUCUUU
miR-342	22	28	m8	hsa-miR-342^brain	UCUCACACAGAAAUCGCACCCGUC
miR-34b	760	767	1A,m8	hsa-miR-34b	UAGGCAGUGUCAUUAGCUGAUUG
miR-377	21	27	m8	hsa-miR-377	AUCACACAAAGGCAACUUUUGU
miR-382	1177	1183	m8	hsa-miR-382^brain	GAAGUUGUUCGUGGUGGAUUCG
miR-410	922	928	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-433-3p	1070	1076	1A	hsa-miR-433^brain	AUCAUGAUGGGCUCCUCGGUGU
miR-493-5p	1004	1011	1A,m8	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-493-5p	1004	1011	1A,m8	hsa-miR-493-5p	UUGUACAUGGUAGGCUUUCAUU
miR-496	1264	1270	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-9	241	247	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.