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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: LRRC4C

Summary

GeneID

57689

Symbol

LRRC4C

Synonyms

KIAA1580|NGL-1|NGL1

Description

leucine rich repeat containing 4C

Locus tag

Gene type

protein-coding

Map location

11p12

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

TCAP

0.85

0.59

NPPA

0.78

C13orf33

0.78

0.59

CAMK1

0.76

0.68

CCIN

0.72

0.71

DUSP13

0.72

0.78

MATK

0.72

0.69

NPBWR1

0.71

0.70

KIF12

0.71

0.69

PLCD3

0.71

0.68

Top 10 negatively co-expressed genes

AC005035.1

-0.45

-0.60

MAP4K4

-0.43

-0.58

FAM107B

-0.43

-0.54

AC005071.3

-0.39

-0.52

PHLDB1

-0.39

-0.46

LAS1L

-0.39

-0.55

ZNF652

-0.39

-0.53

NEK3

-0.39

-0.57

SEMA4B

-0.39

-0.49

PHKA2

-0.38

-0.51

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IPI

14595443

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0050770

regulation of axonogenesis

IDA

neuron, axon (GO term level: 13)

14595443

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016020

membrane

IDA

14595443

GO:0016021

integral to membrane

NAS

14595443

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
NTNG1	KIAA0976 \| Lmnt1	netrin G1	-	HPRD,BioGRID	14595443

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
KEGG_AXON_GUIDANCE	129	103	All SZGR genes in this pathway
SENESE_HDAC3_TARGETS_DN	536	332	All SZGR genes in this pathway
KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_UP	1278	748	All SZGR genes in this pathway
FURUKAWA_DUSP6_TARGETS_PCI35_UP	74	32	All SZGR genes in this pathway
STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN	517	309	All SZGR genes in this pathway
RIGGI_EWING_SARCOMA_PROGENITOR_UP	430	288	All SZGR genes in this pathway
ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN	940	425	All SZGR genes in this pathway
MIKKELSEN_IPS_ICP_WITH_H3K27ME3	54	32	All SZGR genes in this pathway
MIKKELSEN_NPC_ICP_WITH_H3K4ME3	445	257	All SZGR genes in this pathway
GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN	1080	713	All SZGR genes in this pathway
DURAND_STROMA_S_UP	297	194	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-129-5p	90	96	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
				hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-494	85	91	1A	hsa-miR-494^brain	UGAAACAUACACGGGAAACCUCUU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.