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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: SEMA4G

Summary

GeneID

57715

Symbol

SEMA4G

Synonyms

FLJ20590|KIAA1619|MGC102867

Description

sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G

Locus tag

RP11-108L7.1

Gene type

protein-coding

Map location

10q24.31

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0004872

receptor activity

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007399

nervous system development

IEA

neurite (GO term level: 5)

GO:0007275

multicellular organismal development

IEA

GO:0030154

cell differentiation

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
TRIP13	16E1BP	thyroid hormone receptor interactor 13	Two-hybrid	BioGRID	16189514

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
KEGG_AXON_GUIDANCE	129	103	All SZGR genes in this pathway
RODRIGUES_NTN1_TARGETS_DN	158	102	All SZGR genes in this pathway
ODONNELL_TFRC_TARGETS_UP	456	228	All SZGR genes in this pathway
TANAKA_METHYLATED_IN_ESOPHAGEAL_CARCINOMA	103	58	All SZGR genes in this pathway
FERREIRA_EWINGS_SARCOMA_UNSTABLE_VS_STABLE_DN	98	59	All SZGR genes in this pathway
PASQUALUCCI_LYMPHOMA_BY_GC_STAGE_UP	283	177	All SZGR genes in this pathway
MOREAUX_MULTIPLE_MYELOMA_BY_TACI_UP	412	249	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP	1691	1088	All SZGR genes in this pathway
LEIN_MIDBRAIN_MARKERS	82	55	All SZGR genes in this pathway
YAMASHITA_LIVER_CANCER_STEM_CELL_UP	47	38	All SZGR genes in this pathway
CAIRO_LIVER_DEVELOPMENT_DN	222	141	All SZGR genes in this pathway
PILON_KLF1_TARGETS_UP	504	321	All SZGR genes in this pathway
GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN	1080	713	All SZGR genes in this pathway
ZWANG_TRANSIENTLY_UP_BY_1ST_EGF_PULSE_ONLY	1839	928	All SZGR genes in this pathway
NABA_ECM_AFFILIATED	171	89	All SZGR genes in this pathway
NABA_MATRISOME_ASSOCIATED	753	411	All SZGR genes in this pathway
NABA_MATRISOME	1028	559	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	1149	1156	1A,m8	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-132/212	1254	1261	1A,m8	hsa-miR-212^SZ	UAACAGUCUCCAGUCACGGCC
miR-132/212	1254	1261	1A,m8	hsa-miR-132^brain	UAACAGUCUACAGCCAUGGUCG
miR-149	987	993	m8	hsa-miR-149^brain	UCUGGCUCCGUGUCUUCACUCC
miR-153	1097	1104	1A,m8	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-17-5p/20/93.mr/106/519.d	1162	1168	m8	hsa-miR-17-5p	CAAAGUGCUUACAGUGCAGGUAGU
				hsa-miR-20a^brain	UAAAGUGCUUAUAGUGCAGGUAG
				hsa-miR-106a	AAAAGUGCUUACAGUGCAGGUAGC
				hsa-miR-106b^SZ	UAAAGUGCUGACAGUGCAGAU
				hsa-miR-20b^SZ	CAAAGUGCUCAUAGUGCAGGUAG
				hsa-miR-519d	CAAAGUGCCUCCCUUUAGAGUGU
miR-181	1338	1345	1A,m8	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-203.1	834	840	m8	hsa-miR-203	UGAAAUGUUUAGGACCACUAG
miR-219	1208	1215	1A,m8	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-24	986	992	1A	hsa-miR-24^SZ	UGGCUCAGUUCAGCAGGAACAG
miR-342	1351	1357	1A	hsa-miR-342^brain	UCUCACACAGAAAUCGCACCCGUC
miR-448	1098	1104	1A	hsa-miR-448	UUGCAUAUGUAGGAUGUCCCAU
miR-455	1073	1079	m8	hsa-miR-455	UAUGUGCCUUUGGACUACAUCG
miR-485-5p	724	730	m8	hsa-miR-485-5p	AGAGGCUGGCCGUGAUGAAUUC
miR-491	1330	1336	1A	hsa-miR-491^brain	AGUGGGGAACCCUUCCAUGAGGA
miR-491	1330	1336	1A	hsa-miR-491^brain	AGUGGGGAACCCUUCCAUGAGGA
miR-7	24	30	1A	hsa-miR-7^SZ	UGGAAGACUAGUGAUUUUGUUG

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.