Gene Page

Gene Page: SMAP1

Summary

GeneID

60682

Symbol

SMAP1

Synonyms

FLJ13159|FLJ42245|SMAP-1

Description

small ArfGAP 1

Locus tag

RP1-104A17.1

Gene type

protein-coding

Map location

6q13

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0008270

zinc ion binding

IEA

GO:0008060

ARF GTPase activator activity

IEA

GO:0046872

metal ion binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0032312

regulation of ARF GTPase activity

IEA

GO:0045648

positive regulation of erythrocyte differentiation

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005886

plasma membrane

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
BRF2	BRFU \| FLJ11052 \| TFIIIB50	BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	Affinity Capture-MS	BioGRID	17353931
PHLDA3	TIH1	pleckstrin homology-like domain, family A, member 3	Affinity Capture-MS	BioGRID	17353931
PTP4A3	PRL-3 \| PRL-R \| PRL3	protein tyrosine phosphatase type IVA, member 3	Affinity Capture-MS	BioGRID	17353931
WDR8	FLJ20430 \| MGC99569	WD repeat domain 8	Affinity Capture-MS	BioGRID	17353931

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-1/206	37	43	m8	hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
miR-10	688	695	1A,m8	hsa-miR-10a	UACCCUGUAGAUCCGAAUUUGUG
miR-10	688	695	1A,m8	hsa-miR-10b	UACCCUGUAGAACCGAAUUUGU
miR-130/301	674	680	1A	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-181	429	435	1A	hsa-miR-181a^brain	AACAUUCAACGCUGUCGGUGAGU
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^brain	AACAUUCAACCUGUCGGUGAGU
				hsa-miR-181d^brain	AACAUUCAUUGUUGUCGGUGGGUU
miR-193	375	381	1A	hsa-miR-193a	AACUGGCCUACAAAGUCCCAG
miR-193	375	381	1A	hsa-miR-193b	AACUGGCCCUCAAAGUCCCGCUUU
miR-22	202	208	m8	hsa-miR-22^brain	AAGCUGCCAGUUGAAGAACUGU
miR-320	204	210	m8	hsa-miR-320	AAAAGCUGGGUUGAGAGGGCGAA
miR-339	523	529	1A	hsa-miR-339	UCCCUGUCCUCCAGGAGCUCA
miR-496	431	437	1A	hsa-miR-496	AUUACAUGGCCAAUCUC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.