Gene Page: BCL9

Summary
GeneID  607
Symbol  BCL9
Synonyms  LGS|MGC131591
Description  B-cell CLL/lymphoma 9
See related  HGNC:1008|MIM:602597|Ensembl:ENSG00000116128|HPRD:04000|
Locus tag  -
Gene type  protein-coding
Map location  1q21
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.0235 
GSMA_IIAgenome scan meta-analysis (All samples)Psr: 0.00814 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
OGDHL0.900.91
FADS60.850.86
EML20.850.89
SPOCK20.830.84
CEND10.820.88
TOM10.820.83
ABHD120.810.84
LPCAT40.810.84
MYH7B0.810.79
DLGAP30.800.89
Top 10 negatively co-expressed genes
KIAA1949-0.52-0.49
TUBB2B-0.51-0.56
ZNF300-0.51-0.44
RBMX2-0.50-0.62
IGF2BP3-0.50-0.56
ZNF551-0.49-0.45
ZNF311-0.49-0.46
FNBP1L-0.49-0.41
CD24-0.49-0.37
CARHSP1-0.49-0.59
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIPI11955446 |17113272 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0016055Wnt receptor signaling pathwayIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusIEA-
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
CTNNB1CTNNB | DKFZp686D02253 | FLJ25606 | FLJ37923catenin (cadherin-associated protein), beta 1, 88kDaBeta-catenin interacts with LGS1.BIND15294866 
PYGO1DKFZp547G0910pygopus homolog 1 (Drosophila)-HPRD,BioGRID11955446 |14612447 
PYGO21190004M21Rik | FLJ33226pygopus homolog 2 (Drosophila)-HPRD11955446 |14612447 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
WNT_SIGNALING 8971All SZGR genes in this pathway
PID_BETA_CATENIN_NUC_PATHWAY 8060All SZGR genes in this pathway
DELYS_THYROID_CANCER_UP 443294All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP 552347All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN 17811082All SZGR genes in this pathway
GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN 770415All SZGR genes in this pathway
SUZUKI_AMPLIFIED_IN_ORAL_CANCER 1612All SZGR genes in this pathway
MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_17 2512All SZGR genes in this pathway
MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_24 147All SZGR genes in this pathway
DAIRKEE_TERT_TARGETS_DN 12479All SZGR genes in this pathway
SCHAEFFER_PROSTATE_DEVELOPMENT_6HR_DN 514330All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS 988594All SZGR genes in this pathway
BENPORATH_SOX2_TARGETS 734436All SZGR genes in this pathway
PENG_GLUTAMINE_DEPRIVATION_UP 3825All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_6HR_DN 160101All SZGR genes in this pathway
DOUGLAS_BMI1_TARGETS_UP 566371All SZGR genes in this pathway
FOSTER_TOLERANT_MACROPHAGE_DN 409268All SZGR genes in this pathway
GRESHOCK_CANCER_COPY_NUMBER_UP 323240All SZGR genes in this pathway
MILI_PSEUDOPODIA_CHEMOTAXIS_DN 457302All SZGR genes in this pathway
LU_EZH2_TARGETS_DN 414237All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN 19721213All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_VIA_TP53_GROUP_B 549316All SZGR genes in this pathway
ZWANG_EGF_INTERVAL_DN 214124All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1014094161A,m8hsa-miR-101UACAGUACUGUGAUAACUGAAG
miR-129-5p5976031Ahsa-miR-129brainCUUUUUGCGGUCUGGGCUUGC
hsa-miR-129-5pCUUUUUGCGGUCUGGGCUUGCU
miR-14012011207m8hsa-miR-140brainAGUGGUUUUACCCUAUGGUAG
miR-1444104161Ahsa-miR-144UACAGUAUAGAUGAUGUACUAG
miR-15/16/195/424/497171Ahsa-miR-15abrainUAGCAGCACAUAAUGGUUUGUG
hsa-miR-16brainUAGCAGCACGUAAAUAUUGGCG
hsa-miR-15bbrainUAGCAGCACAUCAUGGUUUACA
hsa-miR-195SZUAGCAGCACAGAAAUAUUGGC
hsa-miR-424CAGCAGCAAUUCAUGUUUUGAA
hsa-miR-497CAGCAGCACACUGUGGUUUGU
miR-1811491551Ahsa-miR-181abrainAACAUUCAACGCUGUCGGUGAGU
hsa-miR-181bSZAACAUUCAUUGCUGUCGGUGGG
hsa-miR-181cbrainAACAUUCAACCUGUCGGUGAGU
hsa-miR-181dbrainAACAUUCAUUGUUGUCGGUGGGUU
miR-186361367m8hsa-miR-186CAAAGAAUUCUCCUUUUGGGCUU
miR-188428434m8hsa-miR-188CAUCCCUUGCAUGGUGGAGGGU
miR-200bc/4295805861Ahsa-miR-200bUAAUACUGCCUGGUAAUGAUGAC
hsa-miR-200cUAAUACUGCCGGGUAAUGAUGG
hsa-miR-429UAAUACUGUCUGGUAAAACCGU
miR-204/211427433m8hsa-miR-204brainUUCCCUUUGUCAUCCUAUGCCU
hsa-miR-211UUCCCUUUGUCAUCCUUCGCCU
miR-2163642m8hsa-miR-216UAAUCUCAGCUGGCAACUGUG
miR-2185925991A,m8hsa-miR-218brainUUGUGCUUGAUCUAACCAUGU
miR-22850856m8hsa-miR-22brainAAGCUGCCAGUUGAAGAACUGU
miR-25/32/92/363/3678568621Ahsa-miR-25brainCAUUGCACUUGUCUCGGUCUGA
hsa-miR-32UAUUGCACAUUACUAAGUUGC
hsa-miR-92UAUUGCACUUGUCCCGGCCUG
hsa-miR-367AAUUGCACUUUAGCAAUGGUGA
hsa-miR-92bSZUAUUGCACUCGUCCCGGCCUC
miR-30-5p486492m8hsa-miR-30a-5pUGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrainUGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZUGUAAACAUCCCCGACUGGAAG
hsa-miR-30bSZUGUAAACAUCCUACACUCAGCU
hsa-miR-30e-5pUGUAAACAUCCUUGACUGGA
hsa-miR-30a-5pUGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrainUGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZUGUAAACAUCCCCGACUGGAAG
hsa-miR-30bSZUGUAAACAUCCUACACUCAGCU
hsa-miR-30e-5pUGUAAACAUCCUUGACUGGA
miR-329194200m8hsa-miR-329brainAACACACCUGGUUAACCUCUUU
miR-330124130m8hsa-miR-330brainGCAAAGCACACGGCCUGCAGAGA
hsa-miR-330brainGCAAAGCACACGGCCUGCAGAGA
miR-338477483m8hsa-miR-338brainUCCAGCAUCAGUGAUUUUGUUGA
miR-503171Ahsa-miR-503UAGCAGCGGGAACAGUUCUGCAG
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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