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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: CNBP

Summary

GeneID

7555

Symbol

CNBP

Synonyms

CNBP1|DM2|FLJ11631|PROMM|RNF163|ZCCHC22|ZNF9

Description

CCHC-type zinc finger, nucleic acid binding protein

Locus tag

Gene type

protein-coding

Map location

3q21

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0324

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003676

nucleic acid binding

IEA

GO:0003700

transcription factor activity

TAS

2562787

GO:0005515

protein binding

IPI

17353931

GO:0008270

zinc ion binding

IEA

GO:0046872

metal ion binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006355

regulation of transcription, DNA-dependent

TAS

2562787

GO:0006350

transcription

IEA

GO:0006695

cholesterol biosynthetic process

TAS

2562787

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005737

cytoplasm

IEA

GO:0005783

endoplasmic reticulum

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
APOBEC3C	APOBEC1L \| ARDC2 \| ARDC4 \| ARP5 \| MGC19485 \| PBI \| bK150C2.3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C	Affinity Capture-MS	BioGRID	17353931
BXDC2	BRIX \| FLJ11100	brix domain containing 2	Affinity Capture-MS	BioGRID	17353931
DAP3	DAP-3 \| DKFZp686G12159 \| MGC126058 \| MGC126059 \| MRP-S29 \| MRPS29 \| bMRP-10	death associated protein 3	Affinity Capture-MS	BioGRID	17353931
DHX9	DDX9 \| LKP \| NDHII \| RHA	DEAH (Asp-Glu-Ala-His) box polypeptide 9	Affinity Capture-MS	BioGRID	17353931
EBNA1BP2	EBP2 \| NOBP \| P40	EBNA1 binding protein 2	Affinity Capture-MS	BioGRID	17353931
ERH	DROER \| FLJ27340	enhancer of rudimentary homolog (Drosophila)	Affinity Capture-MS	BioGRID	17353931
HNRNPA3	2610510D13Rik \| D10S102 \| FBRNP \| HNRPA3 \| MGC138232 \| MGC142030	heterogeneous nuclear ribonucleoprotein A3	Affinity Capture-MS	BioGRID	17353931
HNRNPAB	ABBP1 \| FLJ40338 \| HNRPAB	heterogeneous nuclear ribonucleoprotein A/B	Affinity Capture-MS	BioGRID	17353931
HNRNPC	C1 \| C2 \| HNRNP \| HNRPC \| MGC104306 \| MGC105117 \| MGC117353 \| MGC131677 \| SNRPC	heterogeneous nuclear ribonucleoprotein C (C1/C2)	Affinity Capture-MS	BioGRID	17353931
HNRNPR	FLJ25714 \| HNRPR \| hnRNP-R	heterogeneous nuclear ribonucleoprotein R	Affinity Capture-MS	BioGRID	17353931
HNRNPUL1	E1B-AP5 \| E1BAP5 \| FLJ12944 \| HNRPUL1	heterogeneous nuclear ribonucleoprotein U-like 1	Affinity Capture-MS	BioGRID	17353931
IGF2BP1	CRD-BP \| CRDBP \| IMP-1 \| IMP1 \| VICKZ1 \| ZBP1	insulin-like growth factor 2 mRNA binding protein 1	Affinity Capture-MS	BioGRID	17353931
IGF2BP3	DKFZp686F1078 \| IMP-3 \| IMP3 \| KOC1 \| VICKZ3	insulin-like growth factor 2 mRNA binding protein 3	Affinity Capture-MS	BioGRID	17353931
PURA	PUR-ALPHA \| PUR1 \| PURALPHA	purine-rich element binding protein A	Affinity Capture-MS	BioGRID	17353931
RBMX	HNRPG \| RBMXP1 \| RBMXRT \| RNMX \| hnRNP-G	RNA binding motif protein, X-linked	Affinity Capture-MS	BioGRID	17353931
RPA3	REPA3	replication protein A3, 14kDa	Affinity Capture-MS	BioGRID	17353931
RPL23A	FLJ27455 \| MDA20	ribosomal protein L23a	Affinity Capture-MS	BioGRID	17353931
RPL3	MGC104284 \| TARBP-B	ribosomal protein L3	Affinity Capture-MS	BioGRID	17353931
RPL31	MGC88191	ribosomal protein L31	Affinity Capture-MS	BioGRID	17353931
RPL34	MGC111005	ribosomal protein L34	Affinity Capture-MS	BioGRID	17353931
RPL35A	-	ribosomal protein L35a	Affinity Capture-MS	BioGRID	17353931
RPL36	DKFZp566B023	ribosomal protein L36	Affinity Capture-MS	BioGRID	17353931
RPS16	-	ribosomal protein S16	Affinity Capture-MS	BioGRID	17353931
RPS19	DBA	ribosomal protein S19	Affinity Capture-MS	BioGRID	17353931
RPS3A	FTE1 \| MFTL \| MGC23240	ribosomal protein S3A	Affinity Capture-MS	BioGRID	17353931
RSL1D1	CSIG \| DKFZP564M182 \| L12 \| MGC138433 \| MGC142259 \| PBK1	ribosomal L1 domain containing 1	Affinity Capture-MS	BioGRID	17353931
SYNCRIP	GRY-RBP \| HNRPQ1 \| NSAP1 \| RP1-3J17.2 \| dJ3J17.2 \| hnRNP-Q \| pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	Affinity Capture-MS	BioGRID	17353931

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
ONKEN_UVEAL_MELANOMA_DN	526	357	All SZGR genes in this pathway
DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP	1382	904	All SZGR genes in this pathway
RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN	362	238	All SZGR genes in this pathway
SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM	159	93	All SZGR genes in this pathway
SIMBULAN_UV_RESPONSE_NORMAL_DN	33	27	All SZGR genes in this pathway
HATADA_METHYLATED_IN_LUNG_CANCER_UP	390	236	All SZGR genes in this pathway
PUJANA_BRCA1_PCC_NETWORK	1652	1023	All SZGR genes in this pathway
PUJANA_ATM_PCC_NETWORK	1442	892	All SZGR genes in this pathway
PUJANA_CHEK2_PCC_NETWORK	779	480	All SZGR genes in this pathway
LOPEZ_MBD_TARGETS	957	597	All SZGR genes in this pathway
CAFFAREL_RESPONSE_TO_THC_24HR_5_UP	34	23	All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS	988	594	All SZGR genes in this pathway
SHEN_SMARCA2_TARGETS_UP	424	268	All SZGR genes in this pathway
IIZUKA_LIVER_CANCER_PROGRESSION_L0_L1_UP	17	12	All SZGR genes in this pathway
BYSTRYKH_HEMATOPOIESIS_STEM_CELL_AND_BRAIN_QTL_TRANS	185	114	All SZGR genes in this pathway
ZUCCHI_METASTASIS_UP	43	24	All SZGR genes in this pathway
FLECHNER_BIOPSY_KIDNEY_TRANSPLANT_OK_VS_DONOR_UP	555	346	All SZGR genes in this pathway
PARK_HSC_AND_MULTIPOTENT_PROGENITORS	50	33	All SZGR genes in this pathway
SESTO_RESPONSE_TO_UV_C0	107	72	All SZGR genes in this pathway
GRADE_COLON_AND_RECTAL_CANCER_UP	285	167	All SZGR genes in this pathway
WANG_TUMOR_INVASIVENESS_DN	210	128	All SZGR genes in this pathway
GRESHOCK_CANCER_COPY_NUMBER_UP	323	240	All SZGR genes in this pathway
ROME_INSULIN_TARGETS_IN_MUSCLE_UP	442	263	All SZGR genes in this pathway
BAE_BRCA1_TARGETS_UP	75	47	All SZGR genes in this pathway
MARTENS_TRETINOIN_RESPONSE_DN	841	431	All SZGR genes in this pathway
KIM_BIPOLAR_DISORDER_OLIGODENDROCYTE_DENSITY_CORR_UP	682	440	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-129-5p	174	180	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
miR-129-5p	174	180	1A	hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-193	102	108	m8	hsa-miR-193a	AACUGGCCUACAAAGUCCCAG
miR-193	102	108	m8	hsa-miR-193b	AACUGGCCCUCAAAGUCCCGCUUU
miR-320	110	116	1A	hsa-miR-320	AAAAGCUGGGUUGAGAGGGCGAA
miR-326	643	649	m8	hsa-miR-326	CCUCUGGGCCCUUCCUCCAG
miR-330	217	223	m8	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-369-3p	42	48	m8	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-378	689	695	1A	hsa-miR-378	CUCCUGACUCCAGGUCCUGUGU
miR-381	737	743	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-494	764	770	1A	hsa-miR-494^brain	UGAAACAUACACGGGAAACCUCUU
miR-495	220	226	1A	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.