Gene Page: CACNA1F

Summary
GeneID  778
Symbol  CACNA1F
Synonyms  AIED|COD3|CORDX|CORDX3|CSNB2|CSNB2A|CSNBX2|Cav1.4|JM8|JMC8|OA2
Description  calcium channel, voltage-dependent, L type, alpha 1F subunit
See related  HGNC:1393|MIM:300110|Ensembl:ENSG00000102001|HPRD:02119|
Locus tag  -
Gene type  protein-coding
Map location  Xp11.23
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
AssociationA combined odds ratio method (Sun et al. 2008), association studies1Link to SZGene
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
ABR0.910.90
STXBP10.910.90
ZER10.910.89
PGBD50.900.89
ANKRD34A0.900.90
PIP5K1C0.890.90
DAGLA0.890.89
AMIGO10.890.88
ATG9A0.890.88
PI4KA0.890.89
Top 10 negatively co-expressed genes
AF347015.21-0.57-0.45
GNG11-0.56-0.55
AP002478.3-0.55-0.53
C1orf54-0.53-0.53
RAB13-0.52-0.61
AF347015.18-0.52-0.42
NOSTRIN-0.52-0.45
DBI-0.51-0.56
NSBP1-0.51-0.53
MT-CO2-0.51-0.41
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005509calcium ion bindingIEA-
GO:0005244voltage-gated ion channel activityIEA-
GO:0005245voltage-gated calcium channel activityIEA-
GO:0015270dihydropyridine-sensitive calcium channel activityIDA15897456 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006816calcium ion transportIEA-
GO:0006811ion transportIEA-
GO:0050896response to stimulusIEA-
GO:0050908detection of light stimulus involved in visual perceptionIMP7571473 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0016020membraneIEA-
GO:0016021integral to membraneIDA15897456 
GO:0016021integral to membraneIEA-
GO:0005891voltage-gated calcium channel complexIDA15897456 
GO:0005891voltage-gated calcium channel complexIEA-
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
CABP4CSNB2Bcalcium binding protein 4-HPRD,BioGRID15452577 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
KEGG_MAPK_SIGNALING_PATHWAY 267205All SZGR genes in this pathway
KEGG_CALCIUM_SIGNALING_PATHWAY 178134All SZGR genes in this pathway
KEGG_CARDIAC_MUSCLE_CONTRACTION 8051All SZGR genes in this pathway
KEGG_VASCULAR_SMOOTH_MUSCLE_CONTRACTION 11581All SZGR genes in this pathway
KEGG_GNRH_SIGNALING_PATHWAY 10177All SZGR genes in this pathway
KEGG_ALZHEIMERS_DISEASE 169110All SZGR genes in this pathway
KEGG_HYPERTROPHIC_CARDIOMYOPATHY_HCM 8565All SZGR genes in this pathway
KEGG_ARRHYTHMOGENIC_RIGHT_VENTRICULAR_CARDIOMYOPATHY_ARVC 7659All SZGR genes in this pathway
KEGG_DILATED_CARDIOMYOPATHY 9268All SZGR genes in this pathway
SHEDDEN_LUNG_CANCER_GOOD_SURVIVAL_A12 317177All SZGR genes in this pathway
ZWANG_TRANSIENTLY_UP_BY_2ND_EGF_PULSE_ONLY 1725838All SZGR genes in this pathway


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