Gene Page: ATG9A

Summary
GeneID  79065
Symbol  ATG9A
Synonyms  APG9L1|MGD3208
Description  ATG9 autophagy related 9 homolog A (S. cerevisiae)
See related  HGNC:22408|MIM:612204|Ensembl:ENSG00000198925|HPRD:07979|
Locus tag  -
Gene type  protein-coding
Map location  2q35
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_IIAgenome scan meta-analysis (All samples)Psr: 0.00916 
GSMA_IIEgenome scan meta-analysis (European-ancestry samples)Psr: 0.01016 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
VPS350.870.85
MUDENG0.870.85
HIAT10.860.84
SLC30A90.860.84
NIPA20.850.82
PIAS20.850.83
YIPF50.850.84
KIAA17150.850.86
AKAP100.850.86
PSMD50.850.82
Top 10 negatively co-expressed genes
MT-CO2-0.69-0.62
AF347015.8-0.69-0.62
AF347015.21-0.69-0.59
MT-CYB-0.67-0.60
AF347015.2-0.66-0.57
AF347015.31-0.66-0.60
AF347015.33-0.65-0.58
AF347015.26-0.65-0.57
AF347015.15-0.65-0.59
AF347015.18-0.64-0.62
Gene Ontology
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0000045autophagic vacuole formationIMP15755735 
GO:0006914autophagyIEA-
GO:0015031protein transportIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005737cytoplasmIEA-
GO:0005776autophagic vacuoleIEA-
GO:0016020membraneIEA-
GO:0016021integral to membraneIEA-
GO:0031410cytoplasmic vesicleIEA-
 
Pathway annotation
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-289259311Ahsa-miR-28brainAAGGAGCUCACAGUCUAUUGAG
miR-292512581A,m8hsa-miR-29aSZUAGCACCAUCUGAAAUCGGUU
hsa-miR-29bSZUAGCACCAUUUGAAAUCAGUGUU
hsa-miR-29cSZUAGCACCAUUUGAAAUCGGU
miR-338914920m8hsa-miR-338brainUCCAGCAUCAGUGAUUUUGUUGA
miR-34/4492862921Ahsa-miR-34abrainUGGCAGUGUCUUAGCUGGUUGUU
hsa-miR-34cAGGCAGUGUAGUUAGCUGAUUGC
hsa-miR-449UGGCAGUGUAUUGUUAGCUGGU
hsa-miR-449bAGGCAGUGUAUUGUUAGCUGGC
miR-96362368m8hsa-miR-96brainUUUGGCACUAGCACAUUUUUGC
hsa-miR-96brainUUUGGCACUAGCACAUUUUUGC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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