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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: BAT2

Summary

GeneID

7916

Symbol

BAT2

Synonyms

D6S51|D6S51E|DKFZp686D09175|G2

Description

HLA-B associated transcript 2

Locus tag

Gene type

protein-coding

Map location

6p21.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.033

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0924

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IPI

14667819 |16713569

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0005737

cytoplasm

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
C1QBP	GC1QBP \| HABP1 \| SF2p32 \| gC1Q-R \| gC1qR \| p32	complement component 1, q subcomponent binding protein	-	HPRD,BioGRID	14667819
CCR10	GPR2	chemokine (C-C motif) receptor 10	-	HPRD,BioGRID	14667819
CPSF1	CPSF160 \| HSU37012 \| P/cl.18	cleavage and polyadenylation specific factor 1, 160kDa	-	HPRD,BioGRID	14667819
DDX20	DKFZp434H052 \| DP103 \| GEMIN3	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	-	HPRD,BioGRID	14667819
EIF3E	EIF3-P48 \| EIF3S6 \| INT6 \| eIF3-p46	eukaryotic translation initiation factor 3, subunit E	-	HPRD,BioGRID	14667819
FGA	Fib2 \| MGC119422 \| MGC119423 \| MGC119425	fibrinogen alpha chain	-	HPRD,BioGRID	14667819
GANAB	G2AN \| GluII \| KIAA0088	glucosidase, alpha; neutral AB	-	HPRD,BioGRID	14667819
GRB2	ASH \| EGFRBP-GRB2 \| Grb3-3 \| MST084 \| MSTP084	growth factor receptor-bound protein 2	-	HPRD,BioGRID	14667819
HNRNPA1	HNRPA1 \| MGC102835	heterogeneous nuclear ribonucleoprotein A1	-	HPRD,BioGRID	14667819
HNRNPM	DKFZp547H118 \| HNRNPM4 \| HNRPM \| HNRPM4 \| HTGR1 \| NAGR1	heterogeneous nuclear ribonucleoprotein M	-	HPRD,BioGRID	14667819
IFT88	D13S1056E \| DAF19 \| MGC26259 \| RP11-172H24.2 \| TG737 \| TTC10 \| hTg737	intraflagellar transport 88 homolog (Chlamydomonas)	-	HPRD,BioGRID	14667819
IMMT	DKFZp779P1653 \| HMP \| MGC111146 \| P87 \| P87/89 \| P89 \| PIG4 \| PIG52	inner membrane protein, mitochondrial (mitofilin)	-	HPRD,BioGRID	14667819
MAD2L2	MAD2B \| REV7	MAD2 mitotic arrest deficient-like 2 (yeast)	-	HPRD,BioGRID	14667819
MAN2C1	DKFZp686E23167 \| MAN6A8 \| MANA \| MANA1 \| MGC87979	mannosidase, alpha, class 2C, member 1	-	HPRD,BioGRID	14667819
P4HA2	-	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II	-	HPRD,BioGRID	14667819
PRMT2	HRMT1L1 \| MGC111373	protein arginine methyltransferase 2	-	HPRD,BioGRID	14667819
PSMA3	HC8 \| MGC12306 \| MGC32631 \| PSC3	proteasome (prosome, macropain) subunit, alpha type, 3	-	HPRD,BioGRID	14667819
QARS	GLNRS \| PRO2195	glutaminyl-tRNA synthetase	-	HPRD,BioGRID	14667819
SSR3	TRAPG	signal sequence receptor, gamma (translocon-associated protein gamma)	-	HPRD,BioGRID	14667819
UBAP2L	FLJ42300 \| KIAA0144 \| NICE-4	ubiquitin associated protein 2-like	-	HPRD,BioGRID	14667819

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
WILCOX_RESPONSE_TO_PROGESTERONE_DN	66	44	All SZGR genes in this pathway
GARY_CD5_TARGETS_UP	473	314	All SZGR genes in this pathway
HUTTMANN_B_CLL_POOR_SURVIVAL_UP	276	187	All SZGR genes in this pathway
LAIHO_COLORECTAL_CANCER_SERRATED_DN	86	47	All SZGR genes in this pathway
GINESTIER_BREAST_CANCER_ZNF217_AMPLIFIED_DN	335	193	All SZGR genes in this pathway
GINESTIER_BREAST_CANCER_20Q13_AMPLIFICATION_DN	180	101	All SZGR genes in this pathway
MOHANKUMAR_TLX1_TARGETS_UP	414	287	All SZGR genes in this pathway
SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP	479	299	All SZGR genes in this pathway
LIAO_METASTASIS	539	324	All SZGR genes in this pathway
SMITH_TERT_TARGETS_UP	145	91	All SZGR genes in this pathway
LIN_APC_TARGETS	77	55	All SZGR genes in this pathway
LENAOUR_DENDRITIC_CELL_MATURATION_DN	128	90	All SZGR genes in this pathway
FAELT_B_CLL_WITH_VH3_21_UP	44	30	All SZGR genes in this pathway
WELCSH_BRCA1_TARGETS_DN	141	92	All SZGR genes in this pathway
MARSON_BOUND_BY_FOXP3_STIMULATED	1022	619	All SZGR genes in this pathway
MIKKELSEN_ES_ICP_WITH_H3K4ME3	718	401	All SZGR genes in this pathway
MIKKELSEN_NPC_ICP_WITH_H3K4ME3	445	257	All SZGR genes in this pathway
RAO_BOUND_BY_SALL4_ISOFORM_B	517	302	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-374	42	48	1A	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-381	31	38	1A,m8	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-495	145	152	1A,m8	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.