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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: BAT3

Summary

GeneID

7917

Symbol

BAT3

Synonyms

BAG-6|BAG6|D6S52E|G3

Description

HLA-B associated transcript 3

Locus tag

DAQB-195H10.3

Gene type

protein-coding

Map location

6p21.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_I

genome scan meta-analysis

Psr: 0.033

Expression

P value: 1.611

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0507

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IPI

14667819 |15231747 |17353931

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006464

protein modification process

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
ARPC3	ARC21 \| p21-Arc	actin related protein 2/3 complex, subunit 3, 21kDa	Two-hybrid	BioGRID	16169070
B2M	-	beta-2-microglobulin	Two-hybrid	BioGRID	16169070
C19orf10	EUROIMAGE1875335 \| IL25 \| IL27 \| IL27w \| R33729_1 \| SF20	chromosome 19 open reading frame 10	Two-hybrid	BioGRID	16169070
CDK4	CMM3 \| MGC14458 \| PSK-J3	cyclin-dependent kinase 4	Two-hybrid	BioGRID	16169070
CHN2	ARHGAP3 \| BCH \| MGC138360 \| RHOGAP3	chimerin (chimaerin) 2	Two-hybrid	BioGRID	16169070
CSTF2	CstF-64	cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa	Two-hybrid	BioGRID	16169070
CTSB	APPS \| CPSB	cathepsin B	Two-hybrid	BioGRID	16169070
CTSE	CATE	cathepsin E	Two-hybrid	BioGRID	16169070
DNAJB11	ABBP-2 \| ABBP2 \| DJ9 \| EDJ \| ERdj3 \| ERj3 \| HEDJ \| PRO1080 \| UNQ537 \| hDj9	DnaJ (Hsp40) homolog, subfamily B, member 11	Two-hybrid	BioGRID	16169070
DPT	TRAMP	dermatopontin	Two-hybrid	BioGRID	16169070
EDN1	ET1 \| HDLCQ7	endothelin 1	Two-hybrid	BioGRID	16169070
EFEMP2	FBLN4 \| MBP1 \| UPH1	EGF-containing fibulin-like extracellular matrix protein 2	Two-hybrid	BioGRID	16189514
FAM173A	C16orf24 \| MGC2494	family with sequence similarity 173, member A	Two-hybrid	BioGRID	16169070
FKBP2	FKBP-13 \| PPIase	FK506 binding protein 2, 13kDa	Two-hybrid	BioGRID	16169070
HSPA1A	FLJ54303 \| FLJ54370 \| FLJ54392 \| FLJ54408 \| FLJ75127 \| HSP70-1 \| HSP70-1A \| HSP70I \| HSP72 \| HSPA1 \| HSPA1B	heat shock 70kDa protein 1A	in vivo	BioGRID	11230127
IER3	DIF-2 \| DIF2 \| GLY96 \| IEX-1 \| IEX-1L \| IEX1 \| PRG1	immediate early response 3	An unspecified isoform of IEX-1 interacts with BAT3.	BIND	15451437
IGFBP5	IBP5	insulin-like growth factor binding protein 5	Two-hybrid	BioGRID	16169070
IKBKAP	DKFZp781H1425 \| DYS \| ELP1 \| FD \| FLJ12497 \| IKAP \| IKI3 \| TOT1	inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein	Two-hybrid	BioGRID	16169070
IMMT	DKFZp779P1653 \| HMP \| MGC111146 \| P87 \| P87/89 \| P89 \| PIG4 \| PIG52	inner membrane protein, mitochondrial (mitofilin)	Two-hybrid	BioGRID	16169070
IQCG	DKFZp434B227 \| FLJ11667 \| FLJ23571 \| FLJ37775	IQ motif containing G	Two-hybrid	BioGRID	16169070
KLHL12	C3IP1 \| DKIR \| FLJ27152	kelch-like 12 (Drosophila)	Two-hybrid	BioGRID	16189514
MAGED1	DLXIN-1 \| NRAGE	melanoma antigen family D, 1	Affinity Capture-MS	BioGRID	17353931
NBL1	D1S1733E \| DAN \| DAND1 \| MGC8972 \| NB \| NO3	neuroblastoma, suppression of tumorigenicity 1	-	HPRD,BioGRID	10390159
NDUFA6	B14 \| CI-B14 \| LYRM6 \| NADHB14	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa	Two-hybrid	BioGRID	16169070
NOMO1	Nomo \| PM5	NODAL modulator 1	Two-hybrid	BioGRID	16169070
PELP1	HMX3 \| MNAR \| P160	proline, glutamate and leucine rich protein 1	Two-hybrid	BioGRID	16169070
PPAP2C	LPP2 \| PAP-2c \| PAP2-g	phosphatidic acid phosphatase type 2C	Two-hybrid	BioGRID	16169070
PPP4C	PP4 \| PPH3 \| PPX	protein phosphatase 4 (formerly X), catalytic subunit	Affinity Capture-MS	BioGRID	17353931
PRG2	LPPR3 \| LPR3 \| PRG-2	plasticity-related gene 2	Two-hybrid	BioGRID	16169070
PRNP	ASCR \| CD230 \| CJD \| GSS \| MGC26679 \| PRIP \| PrP \| PrP27-30 \| PrP33-35C \| PrPc \| prion	prion protein	Two-hybrid	BioGRID	16169070
PTH	PTH1	parathyroid hormone	Two-hybrid	BioGRID	16169070
RAB8A	MEL \| RAB8	RAB8A, member RAS oncogene family	Two-hybrid	BioGRID	16169070
RCN2	E6BP \| ERC-55 \| ERC55 \| TCBP49	reticulocalbin 2, EF-hand calcium binding domain	Two-hybrid	BioGRID	16169070
REG1B	PSPS2 \| REGH \| REGI-BETA \| REGL	regenerating islet-derived 1 beta	Two-hybrid	BioGRID	16169070
RNF126	FLJ20552 \| MGC1022 \| MGC14317	ring finger protein 126	-	HPRD	14667819
S100A4	18A2 \| 42A \| CAPL \| FSP1 \| MTS1 \| P9KA \| PEL98	S100 calcium binding protein A4	Two-hybrid	BioGRID	16169070
SETDB1	ESET \| KG1T \| KIAA0067 \| KMT1E	SET domain, bifurcated 1	Two-hybrid	BioGRID	16169070
SMN1	BCD541 \| SMA \| SMA1 \| SMA2 \| SMA3 \| SMA4 \| SMA@ \| SMN \| SMNT \| T-BCD541	survival of motor neuron 1, telomeric	Two-hybrid	BioGRID	16169070
STX5	SED5 \| STX5A	syntaxin 5	Two-hybrid	BioGRID	16169070
TAC1	Hs.2563 \| NK2 \| NKNA \| NPK \| TAC2	tachykinin, precursor 1	Two-hybrid	BioGRID	16169070
TDGF1	CR \| CRGF \| CRIPTO \| Cripto-1	teratocarcinoma-derived growth factor 1	Two-hybrid	BioGRID	16169070
TOMM20	KIAA0016 \| MAS20 \| MGC117367 \| MOM19 \| TOM20	translocase of outer mitochondrial membrane 20 homolog (yeast)	Two-hybrid	BioGRID	16169070
TSC22D1	DKFZp686O19206 \| MGC17597 \| RP11-269C23.2 \| TGFB1I4 \| TSC22	TSC22 domain family, member 1	Affinity Capture-MS	BioGRID	17353931
UBL7	BMSC-UbP \| MGC14421 \| TCBA1	ubiquitin-like 7 (bone marrow stromal cell-derived)	-	HPRD	14667819
WDR8	FLJ20430 \| MGC99569	WD repeat domain 8	Affinity Capture-MS	BioGRID	17353931
XRN1	DKFZp434P0721 \| DKFZp686B22225 \| DKFZp686F19113 \| FLJ41903 \| SEP1	5'-3' exoribonuclease 1	-	HPRD,BioGRID	15231747

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
LIU_SOX4_TARGETS_DN	309	191	All SZGR genes in this pathway
GINESTIER_BREAST_CANCER_20Q13_AMPLIFICATION_DN	180	101	All SZGR genes in this pathway
DARWICHE_SKIN_TUMOR_PROMOTER_DN	185	115	All SZGR genes in this pathway
DARWICHE_PAPILLOMA_RISK_LOW_DN	165	107	All SZGR genes in this pathway
DARWICHE_PAPILLOMA_RISK_HIGH_DN	180	110	All SZGR genes in this pathway
DARWICHE_SQUAMOUS_CELL_CARCINOMA_DN	181	107	All SZGR genes in this pathway
IVANOV_MUTATED_IN_COLON_CANCER	13	9	All SZGR genes in this pathway
RASHI_RESPONSE_TO_IONIZING_RADIATION_6	84	54	All SZGR genes in this pathway
MARTORIATI_MDM4_TARGETS_FETAL_LIVER_DN	514	319	All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS	988	594	All SZGR genes in this pathway
MCCLUNG_DELTA_FOSB_TARGETS_8WK	47	38	All SZGR genes in this pathway
LEE_CALORIE_RESTRICTION_NEOCORTEX_UP	83	66	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_DN	1237	837	All SZGR genes in this pathway
BURTON_ADIPOGENESIS_7	51	34	All SZGR genes in this pathway
MARSON_BOUND_BY_E2F4_UNSTIMULATED	728	415	All SZGR genes in this pathway
MATZUK_SPERMATOCYTE	72	55	All SZGR genes in this pathway
MUELLER_PLURINET	299	189	All SZGR genes in this pathway
MOOTHA_PGC	420	269	All SZGR genes in this pathway
YOSHIMURA_MAPK8_TARGETS_UP	1305	895	All SZGR genes in this pathway
FONTAINE_FOLLICULAR_THYROID_ADENOMA_UP	75	43	All SZGR genes in this pathway
KIM_ALL_DISORDERS_OLIGODENDROCYTE_NUMBER_CORR_UP	756	494	All SZGR genes in this pathway
KIM_BIPOLAR_DISORDER_OLIGODENDROCYTE_DENSITY_CORR_UP	682	440	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-200bc/429	60	66	m8	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-331	31	37	1A	hsa-miR-331^brain	GCCCCUGGGCCUAUCCUAGAA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.