Gene Page: CHD6

Summary
GeneID  84181
Symbol  CHD6
Synonyms  CHD5|KIAA1335|RIGB
Description  chromodomain helicase DNA binding protein 6
See related  HGNC:19057|Ensembl:ENSG00000124177|HPRD:13049|
Locus tag  RP4-620E11.2
Gene type  protein-coding
Map location  20q12
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 1 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
Top 10 negatively co-expressed genes
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0000166nucleotide bindingIEA-
GO:0003677DNA bindingIEA-
GO:0003682chromatin bindingNAS12592387 
GO:0005524ATP bindingIEA-
GO:0016787hydrolase activityIEA-
GO:0008026ATP-dependent helicase activityIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007399nervous system developmentNASneurite (GO term level: 5)12592387 
GO:0006333chromatin assembly or disassemblyIEA-
GO:0006355regulation of transcription, DNA-dependentNAS12592387 
GO:0006350transcriptionIEA-
GO:0006338chromatin remodelingNAS12592387 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0000785chromatinIEA-
GO:0005634nucleusNAS12592387 
 
Pathway annotation
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-143156215681Ahsa-miR-143brainUGAGAUGAAGCACUGUAGCUCA
miR-194142514321A,m8hsa-miR-194UGUAACAGCAACUCCAUGUGGA
miR-26129613021Ahsa-miR-26abrainUUCAAGUAAUCCAGGAUAGGC
hsa-miR-26bSZUUCAAGUAAUUCAGGAUAGGUU
miR-496154315491Ahsa-miR-496AUUACAUGGCCAAUCUC
miR-504162168m8hsa-miR-504AGACCCUGGUCUGCACUCUAU
miR-543154815541Ahsa-miR-543AAACAUUCGCGGUGCACUUCU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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