Gene Page

Gene Page: IFT20

Summary

GeneID

90410

Symbol

IFT20

Synonyms

Description

intraflagellar transport 20 homolog (Chlamydomonas)

Locus tag

Gene type

protein-coding

Map location

17q11.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IPI

16189514

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0030030

cell projection organization

IEA

axon (GO term level: 7)

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005794

Golgi apparatus

IEA

GO:0005814

centriole

IEA

GO:0005929

cilium

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
ABI2	ABI-2 \| ABI2B \| AIP-1 \| AblBP3 \| SSH3BP2 \| argBPIA \| argBPIB	abl interactor 2	Two-hybrid	BioGRID	16189514
C19orf50	FLJ25480 \| MGC2749 \| MST096 \| MSTP096	chromosome 19 open reading frame 50	Affinity Capture-Western Two-hybrid	BioGRID	16189514
EXOC7	2-5-3p \| DKFZp686J04253 \| EX070 \| EXO70 \| EXOC1 \| Exo70p \| FLJ40965 \| FLJ46415 \| YJL085W	exocyst complex component 7	Two-hybrid	BioGRID	16189514
FBF1	Alb \| FBF-1 \| FLJ00103	Fas (TNFRSF6) binding factor 1	Two-hybrid	BioGRID	16189514
IFT57	ESRRBL1 \| FLJ10147 \| HIPPI \| MHS4R2	intraflagellar transport 57 homolog (Chlamydomonas)	-	HPRD	12821668
KIF3B	HH0048 \| KIAA0359	kinesin family member 3B	-	HPRD	12821668
TREX1	AGS1 \| AGS5 \| CRV \| DKFZp434J0310 \| DRN3 \| HERNS	three prime repair exonuclease 1	Two-hybrid	BioGRID	16189514

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-129-5p	127	133	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
				hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-137	370	377	1A,m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-30-3p	71	78	1A,m8	hsa-miR-30a-3p	CUUUCAGUCGGAUGUUUGCAGC
miR-30-3p	71	78	1A,m8	hsa-miR-30e-3p	CUUUCAGUCGGAUGUUUACAGC
miR-375	29	35	1A	hsa-miR-375	UUUGUUCGUUCGGCUCGCGUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.