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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: STARD13

Summary

GeneID

90627

Symbol

STARD13

Synonyms

DLC2|FLJ37385|GT650

Description

StAR-related lipid transfer (START) domain containing 13

Locus tag

RP11-81F11.1

Gene type

protein-coding

Map location

13q12-q13

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005096

GTPase activator activity

IEA

GO:0005515

protein binding

IPI

14697242

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007165

signal transduction

IEA

GO:0045786

negative regulation of cell cycle

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005811

lipid particle

IEA

GO:0005622

intracellular

IEA

GO:0005737

cytoplasm

IEA

GO:0005739

mitochondrion

IEA

GO:0016020

membrane

IEA

GO:0034430

monolayer-surrounded lipid storage body outer lipid monolayer

IEA

GO:0031966

mitochondrial membrane

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
BAI2	-	brain-specific angiogenesis inhibitor 2	STARD13 (RhoGAP) interacts with BAI2.	BIND	14697242
BAI2	-	brain-specific angiogenesis inhibitor 2	-	HPRD,BioGRID	14697242
CNTN2	AXT \| DKFZp781D102 \| FLJ42746 \| MGC157722 \| TAG-1 \| TAX \| TAX1	contactin 2 (axonal)	Affinity Capture-Western	BioGRID	14697242
EPB41L1	4.1N \| DKFZp686H17242 \| KIAA0338 \| MGC11072	erythrocyte membrane protein band 4.1-like 1	STARD13 (RhoGAP) interacts with EPB41L1 (KIAA0338).	BIND	14697242
EPB41L1	4.1N \| DKFZp686H17242 \| KIAA0338 \| MGC11072	erythrocyte membrane protein band 4.1-like 1	-	HPRD,BioGRID	14697242
HMGCR	-	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	-	HPRD,BioGRID	14697242
HMGCR	-	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	STARD13 (RhoGAP) interacts with HMGCR (HMG CoA reductase).	BIND	14697242
HSP90AA1	FLJ31884 \| HSP86 \| HSP89A \| HSP90A \| HSP90N \| HSPC1 \| HSPCA \| HSPCAL1 \| HSPCAL4 \| HSPN \| Hsp89 \| Hsp90 \| LAP2	heat shock protein 90kDa alpha (cytosolic), class A member 1	Two-hybrid	BioGRID	14697242
HSP90AB1	D6S182 \| FLJ26984 \| HSP90-BETA \| HSP90B \| HSPC2 \| HSPCB	heat shock protein 90kDa alpha (cytosolic), class B member 1	STARD13 (RhoGAP) interacts with HSPCB.	BIND	14697242
HSP90AB1	D6S182 \| FLJ26984 \| HSP90-BETA \| HSP90B \| HSPC2 \| HSPCB		-	HPRD	14697242
ITPR1	INSP3R1 \| IP3R \| IP3R1 \| SCA15 \| SCA16	inositol 1,4,5-triphosphate receptor, type 1	STARD13 (RhoGAP) interacts with ITPR1.	BIND	14697242
ITPR1	INSP3R1 \| IP3R \| IP3R1 \| SCA15 \| SCA16	inositol 1,4,5-triphosphate receptor, type 1	Two-hybrid	BioGRID	14697242
KIF1B	CMT2 \| CMT2A \| CMT2A1 \| FLJ23699 \| HMSNII \| KIAA0591 \| KIAA1448 \| KLP \| MGC134844	kinesin family member 1B	-	HPRD,BioGRID	14697242
KIF1B		kinesin family member 1B	STARD13 (RhoGAP) interacts with KIF1B.	BIND	14697242
SMARCD3	BAF60C \| CRACD3 \| MGC111010 \| Rsc6p	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	STARD13 (RhoGAP) interacts with an unspecified isoform of SMARCD3 (SWI/SNF).	BIND	14697242
SMARCD3	BAF60C \| CRACD3 \| MGC111010 \| Rsc6p		Two-hybrid	BioGRID	14697242
TAX1BP1	CALCOCO3 \| T6BP \| TXBP151	Tax1 (human T-cell leukemia virus type I) binding protein 1	STARD13 (RhoGAP) interacts with TAX1BP1 (Tax1BP).	BIND	14697242
TAX1BP1	CALCOCO3 \| T6BP \| TXBP151	Tax1 (human T-cell leukemia virus type I) binding protein 1	-	HPRD,BioGRID	14697242
TRIM58	BIA2 \| DKFZp434C091	tripartite motif-containing 58	Two-hybrid	BioGRID	14697242
TUBA1A	B-ALPHA-1 \| FLJ25113 \| LIS3 \| TUBA3	tubulin, alpha 1a	Affinity Capture-Western Two-hybrid	BioGRID	14697242
TUBA1B	K-ALPHA-1	tubulin, alpha 1b	STARD13 (RhoGAP) interacts with K-ALPHA-1 (alpha-tubulin).	BIND	14697242
TUBA4A	FLJ30169 \| H2-ALPHA \| TUBA1	tubulin, alpha 4a	-	HPRD	14697242

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
REACTOME_SIGNALING_BY_RHO_GTPASES	113	81	All SZGR genes in this pathway
BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN	169	118	All SZGR genes in this pathway
SOTIRIOU_BREAST_CANCER_GRADE_1_VS_3_DN	52	34	All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_DN	537	339	All SZGR genes in this pathway
DELYS_THYROID_CANCER_DN	232	154	All SZGR genes in this pathway
VANHARANTA_UTERINE_FIBROID_UP	45	26	All SZGR genes in this pathway
ODONNELL_METASTASIS_UP	82	58	All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_DN	855	609	All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN	483	336	All SZGR genes in this pathway
DAIRKEE_TERT_TARGETS_DN	124	79	All SZGR genes in this pathway
ONDER_CDH1_TARGETS_2_UP	256	159	All SZGR genes in this pathway
ONDER_CDH1_TARGETS_1_DN	169	102	All SZGR genes in this pathway
ZHANG_TARGETS_OF_EWSR1_FLI1_FUSION	88	68	All SZGR genes in this pathway
IVANOVA_HEMATOPOIESIS_STEM_CELL_AND_PROGENITOR	681	420	All SZGR genes in this pathway
XU_GH1_AUTOCRINE_TARGETS_UP	268	157	All SZGR genes in this pathway
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1	528	324	All SZGR genes in this pathway
MASSARWEH_TAMOXIFEN_RESISTANCE_DN	258	160	All SZGR genes in this pathway
MASSARWEH_RESPONSE_TO_ESTRADIOL	61	47	All SZGR genes in this pathway
BOCHKIS_FOXA2_TARGETS	425	261	All SZGR genes in this pathway
CHANDRAN_METASTASIS_DN	306	191	All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_4HR_DN	254	158	All SZGR genes in this pathway
WAKABAYASHI_ADIPOGENESIS_PPARG_RXRA_BOUND_8D	882	506	All SZGR genes in this pathway
KRIEG_HYPOXIA_NOT_VIA_KDM3A	770	480	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	2345	2351	1A	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-125/351	24	31	1A,m8	hsa-miR-125b^brain	UCCCUGAGACCCUAACUUGUGA
				hsa-miR-125a^brain	UCCCUGAGACCCUUUAACCUGUG
				hsa-miR-125b^brain	UCCCUGAGACCCUAACUUGUGA
				hsa-miR-125a^brain	UCCCUGAGACCCUUUAACCUGUG
miR-130/301	1010	1016	m8	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-148/152	1011	1018	1A,m8	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-182	2404	2410	m8	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-324-5p	2029	2035	m8	hsa-miR-324-5p	CGCAUCCCCUAGGGCAUUGGUGU
miR-369-3p	2334	2340	1A	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-374	2334	2340	m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-410	399	405	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-9	560	567	1A,m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA
miR-9	560	567	1A,m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.