Gene Page: SFRS2IP

Summary
GeneID  9169
Symbol  SFRS2IP
Synonyms  CASP11|SIP1|SRRP129
Description  splicing factor, arginine/serine-rich 2, interacting protein
See related  HGNC:10784|MIM:603668|Ensembl:ENSG00000139218|HPRD:04720|
Locus tag  -
Gene type  protein-coding
Map location  12q12-q13.11
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
ExpressionExpressionP value: 2.491 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
Top 10 negatively co-expressed genes
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIPI9447963 
GO:0031202RNA splicing factor activity, transesterification mechanismIDA9447963 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0000245spliceosome assemblyIDA9447963 
GO:0006397mRNA processingTAS9447963 
GO:0008380RNA splicingIDA9447963 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusIEA-
GO:0005665DNA-directed RNA polymerase II, core complexTAS9224939 
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
SFRS1ASF | MGC5228 | SF2 | SF2p33 | SRp30asplicing factor, arginine/serine-rich 1-HPRD,BioGRID9447963 
SFRS2PR264 | SC-35 | SC35 | SFRS2A | SRp30bsplicing factor, arginine/serine-rich 2-HPRD9447963 
SFRS3SRp20splicing factor, arginine/serine-rich 3-HPRD,BioGRID9447963 
SNRNP70RNPU1Z | RPU1 | SNRP70 | U170K | U1AP | U1RNPsmall nuclear ribonucleoprotein 70kDa (U1)-HPRD9447963 
SRPK1SFRSK1SFRS protein kinase 1-HPRD8208298 
U2AF2U2AF65U2 small nuclear RNA auxiliary factor 2-HPRD,BioGRID9447963 
 
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1/206265526621A,m8hsa-miR-1UGGAAUGUAAAGAAGUAUGUA
hsa-miR-206SZUGGAAUGUAAGGAAGUGUGUGG
hsa-miR-613AGGAAUGUUCCUUCUUUGCC
miR-125/351140814141Ahsa-miR-125bbrainUCCCUGAGACCCUAACUUGUGA
hsa-miR-125abrainUCCCUGAGACCCUUUAACCUGUG
miR-12884901Ahsa-miR-128aUCACAGUGAACCGGUCUCUUUU
hsa-miR-128bUCACAGUGAACCGGUCUCUUUC
miR-148/152163169m8hsa-miR-148aUCAGUGCACUACAGAACUUUGU
hsa-miR-152brainUCAGUGCAUGACAGAACUUGGG
hsa-miR-148bUCAGUGCAUCACAGAACUUUGU
miR-278490m8hsa-miR-27abrainUUCACAGUGGCUAAGUUCCGC
hsa-miR-27bbrainUUCACAGUGGCUAAGUUCUGC
miR-382697703m8hsa-miR-382brainGAAGUUGUUCGUGGUGGAUUCG
miR-409-3p26542660m8hsa-miR-409-3pCGAAUGUUGCUCGGUGAACCCCU
miR-5057217271Ahsa-miR-505GUCAACACUUGCUGGUUUCCUC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.