| AKAP8L | DKFZp434L0650 | HA95 | HAP95 | NAKAP | NAKAP95 | A kinase (PRKA) anchor protein 8-like | Affinity Capture-MS | BioGRID | 17353931 |
| ATXN10 | E46L | FLJ37990 | SCA10 | ataxin 10 | Affinity Capture-MS | BioGRID | 17353931 |
| BAT3 | BAG-6 | BAG6 | D6S52E | G3 | HLA-B associated transcript 3 | Affinity Capture-MS | BioGRID | 17353931 |
| BRP44L | CGI-129 | dJ68L15.3 | brain protein 44-like | Two-hybrid | BioGRID | 16169070 |
| CALML5 | CLSP | calmodulin-like 5 | Affinity Capture-MS | BioGRID | 17353931 |
| CCDC59 | BR22 | DKFZp686K1021 | FLJ10294 | HSPC128 | TAP26 | coiled-coil domain containing 59 | Affinity Capture-MS | BioGRID | 17353931 |
| COPG | COPG1 | FLJ21068 | coatomer protein complex, subunit gamma | Affinity Capture-MS | BioGRID | 17353931 |
| COPG2 | 2-COP | DKFZp761N09121 | FLJ11781 | coatomer protein complex, subunit gamma 2 | Affinity Capture-MS | BioGRID | 17353931 |
| DLX4 | BP1 | DLX7 | DLX8 | DLX9 | distal-less homeobox 4 | - | HPRD,BioGRID | 11084035 |
| DLX5 | - | distal-less homeobox 5 | in vivo
Two-hybrid | BioGRID | 11084035 |
| EIF3E | EIF3-P48 | EIF3S6 | INT6 | eIF3-p46 | eukaryotic translation initiation factor 3, subunit E | Affinity Capture-MS | BioGRID | 17353931 |
| EIF3J | EIF3S1 | eIF3-alpha | eIF3-p35 | eukaryotic translation initiation factor 3, subunit J | Two-hybrid | BioGRID | 16169070 |
| FANCI | FLJ10719 | KIAA1794 | Fanconi anemia, complementation group I | Affinity Capture-MS | BioGRID | 17353931 |
| GCN1L1 | GCN1 | GCN1L | KIAA0219 | GCN1 general control of amino-acid synthesis 1-like 1 (yeast) | Affinity Capture-MS | BioGRID | 17353931 |
| GPR135 | HUMNPIIY20 | G protein-coupled receptor 135 | Two-hybrid | BioGRID | 16169070 |
| HEATR1 | BAP28 | FLJ10359 | MGC72083 | HEAT repeat containing 1 | Affinity Capture-MS | BioGRID | 17353931 |
| HEATR2 | FLJ20397 | FLJ25564 | FLJ31671 | FLJ39381 | HEAT repeat containing 2 | Affinity Capture-MS | BioGRID | 17353931 |
| HSPB1 | CMT2F | DKFZp586P1322 | HMN2B | HS.76067 | HSP27 | HSP28 | Hsp25 | SRP27 | heat shock 27kDa protein 1 | Affinity Capture-MS | BioGRID | 17353931 |
| IARS | FLJ20736 | IARS1 | ILRS | PRO0785 | isoleucyl-tRNA synthetase | Affinity Capture-MS | BioGRID | 17353931 |
| KIAA1967 | DBC-1 | DBC1 | KIAA1967 | Affinity Capture-MS | BioGRID | 17353931 |
| LRPPRC | CLONE-23970 | GP130 | LRP130 | LSFC | leucine-rich PPR-motif containing | Affinity Capture-MS | BioGRID | 17353931 |
| MAGED1 | DLXIN-1 | NRAGE | melanoma antigen family D, 1 | - | HPRD,BioGRID | 11084035 |
| MSX2 | CRS2 | FPP | HOX8 | MSH | PFM | PFM1 | msh homeobox 2 | - | HPRD,BioGRID | 11084035 |11959851
|
| MTHFD1L | DKFZp586G1517 | FLJ21145 | FTHFSDC1 | MTC1THFS | dJ292B18.2 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like | Affinity Capture-MS | BioGRID | 17353931 |
| NEDD8 | FLJ43224 | MGC104393 | MGC125896 | MGC125897 | Nedd-8 | neural precursor cell expressed, developmentally down-regulated 8 | Affinity Capture-MS | BioGRID | 17353931 |
| NGFR | CD271 | Gp80-LNGFR | TNFRSF16 | p75(NTR) | p75NTR | nerve growth factor receptor (TNFR superfamily, member 16) | Affinity Capture-Western | BioGRID | 12716928 |
| NOC2L | DKFZp564C186 | FLJ35172 | NIR | nucleolar complex associated 2 homolog (S. cerevisiae) | Affinity Capture-MS | BioGRID | 17353931 |
| NUP160 | DKFZp686M14102 | MGC150678 | MGC150679 | nucleoporin 160kDa | Affinity Capture-MS | BioGRID | 17353931 |
| NUP205 | C7orf14 | nucleoporin 205kDa | Affinity Capture-MS | BioGRID | 17353931 |
| PJA1 | RNF70 | praja 1 | - | HPRD,BioGRID | 11959851 |
| PJA2 | KIAA0438 | Neurodap1 | RNF131 | praja 2, RING-H2 motif containing | - | HPRD,BioGRID | 11959851 |
| PLK1 | PLK | STPK13 | polo-like kinase 1 (Drosophila) | Two-hybrid | BioGRID | 16169070 |
| RFX1 | EF-C | regulatory factor X, 1 (influences HLA class II expression) | Two-hybrid | BioGRID | 16169070 |
| ROR2 | BDB | BDB1 | MGC163394 | NTRKR2 | receptor tyrosine kinase-like orphan receptor 2 | - | HPRD,BioGRID | 12754255 |
| SIRT7 | MGC126840 | MGC126842 | SIR2L7 | sirtuin (silent mating type information regulation 2 homolog) 7 (S. cerevisiae) | Two-hybrid | BioGRID | 16169070 |
| SLC25A1 | CTP | SLC20A3 | solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 | Affinity Capture-MS | BioGRID | 17353931 |
| SMC3 | BAM | BMH | CDLS3 | CSPG6 | HCAP | SMC3L1 | structural maintenance of chromosomes 3 | Affinity Capture-MS | BioGRID | 17353931 |
| SPTLC1 | HSAN | HSAN1 | HSN1 | LBC1 | LCB1 | MGC14645 | SPT1 | SPTI | serine palmitoyltransferase, long chain base subunit 1 | Affinity Capture-MS | BioGRID | 17353931 |
| TELO2 | CLK2 | DKFZp434A073 | FLJ10924 | KIAA0683 | TEL2 | c305C8.3 | hCLK2 | TEL2, telomere maintenance 2, homolog (S. cerevisiae) | Affinity Capture-MS | BioGRID | 17353931 |
| TIMM50 | MGC102733 | TIM50 | TIM50L | translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) | Affinity Capture-MS | BioGRID | 17353931 |
| TRAF4 | CART1 | MLN62 | RNF83 | TNF receptor-associated factor 4 | TRAF4 interacts with NRAGE. | BIND | 12023963 |
| UBR5 | DD5 | EDD | EDD1 | FLJ11310 | HYD | KIAA0896 | MGC57263 | ubiquitin protein ligase E3 component n-recognin 5 | Affinity Capture-MS | BioGRID | 17353931 |
| UNC5A | FLJ16449 | KIAA1976 | UNC5H1 | unc-5 homolog A (C. elegans) | - | HPRD,BioGRID | 12598531 |
| XIAP | API3 | BIRC4 | ILP1 | MIHA | XLP2 | X-linked inhibitor of apoptosis | - | HPRD,BioGRID | 11546791 |
