Gene Page: SNPH

Summary
GeneID  9751
Symbol  SNPH
Synonyms  KIAA0374|MGC46096|bA314N13.5
Description  syntaphilin
See related  HGNC:15931|MIM:604942|Ensembl:ENSG00000101298|HPRD:16081|
Locus tag  -
Gene type  protein-coding
Map location  20p13
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 3 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
AGPAT30.920.93
NFE2L10.910.92
SIDT20.890.89
SPATA20.890.89
TBC1D9B0.890.90
AP006216.10.880.93
TOM1L20.880.88
ATG9A0.880.88
ZBTB40.870.91
AMIGO10.870.87
Top 10 negatively co-expressed genes
C8orf59-0.56-0.54
GNG11-0.55-0.51
AL050337.1-0.54-0.53
ST20-0.54-0.57
PFDN5-0.54-0.52
SYCP3-0.53-0.51
C1orf54-0.53-0.45
RPL31-0.52-0.57
RPL35-0.51-0.56
C1orf61-0.51-0.46
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0017075syntaxin-1 bindingNAS10707983 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007269neurotransmitter secretionNASneuron, axon, Synap, serotonin, Neurotransmitter, dopamine (GO term level: 8)10707983 
GO:0016081synaptic vesicle docking during exocytosisNASSynap (GO term level: 10)10707983 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0019717synaptosomeIEASynap, Brain (GO term level: 7)-
GO:0045202synapseIEAneuron, Synap, Neurotransmitter, Glial (GO term level: 2)-
GO:0016020membraneIEA-
GO:0016021integral to membraneIEA-
GO:0030054cell junctionIEA-
 
Pathway annotation
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-130/301102210291A,m8hsa-miR-130abrainCAGUGCAAUGUUAAAAGGGCAU
hsa-miR-301CAGUGCAAUAGUAUUGUCAAAGC
hsa-miR-130bbrainCAGUGCAAUGAUGAAAGGGCAU
hsa-miR-454-3pUAGUGCAAUAUUGCUUAUAGGGUUU
miR-148/15216371643m8hsa-miR-148aUCAGUGCACUACAGAACUUUGU
hsa-miR-152brainUCAGUGCAUGACAGAACUUGGG
hsa-miR-148bUCAGUGCAUCACAGAACUUUGU
miR-1910211027m8hsa-miR-19aUGUGCAAAUCUAUGCAAAACUGA
hsa-miR-19bUGUGCAAAUCCAUGCAAAACUGA
miR-331315231581Ahsa-miR-331brainGCCCCUGGGCCUAUCCUAGAA
miR-346323732431Ahsa-miR-346brainUGUCUGCCCGCAUGCCUGCCUCU
miR-485-3p197019771A,m8hsa-miR-485-3pGUCAUACACGGCUCUCCUCUCU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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