Gene Page: TBC1D4

Summary
GeneID  9882
Symbol  TBC1D4
Synonyms  AS160|DKFZp779C0666
Description  TBC1 domain family, member 4
See related  HGNC:19165|Ensembl:ENSG00000136111|HPRD:18164|
Locus tag  RP11-159J2.1
Gene type  protein-coding
Map location  13q22.2
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
MTMR60.890.89
ARL10.890.90
TSNAX0.880.89
IMPA10.880.90
SPTLC10.860.87
C6orf2110.860.89
DNAJB90.860.89
PPP3R10.860.89
EFHA20.850.90
ARL8B0.850.87
Top 10 negatively co-expressed genes
AL022328.1-0.51-0.57
ZNF814-0.46-0.52
AC006028.3-0.46-0.50
C16orf79-0.45-0.49
AC010300.1-0.44-0.47
DMPK-0.44-0.43
NPIP-0.43-0.43
IL3RA-0.43-0.57
WDR86-0.43-0.42
SMTN-0.42-0.45
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
C12orf35FLJ10652 | FLJ20696chromosome 12 open reading frame 35-HPRD12421765 
C3orf63DKFZp686C2456 | KIAA1105 | RAP140 | se89-1chromosome 3 open reading frame 63-HPRD12421765 
CDK5RAP2C48 | Cep215 | DKFZp686B1070 | DKFZp686D1070 | KIAA1633 | MCPH3CDK5 regulatory subunit associated protein 2-HPRD12421765 
DNPEPASPEP | DAPaspartyl aminopeptidaseAffinity Capture-MSBioGRID17353931 
EP400CAGH32 | DKFZP434I225 | FLJ42018 | FLJ45115 | P400 | TNRC12E1A binding protein p400-HPRD12421765 
KIAA0556-KIAA0556-HPRD12421765 
NAV1DKFZp781D0314 | FLJ12560 | FLJ14203 | KIAA1151 | MGC14961 | POMFIL3 | steerin-1neuron navigator 1-HPRD12421765 
NFAT5KIAA0827 | NF-AT5 | NFATL1 | NFATZ | OREBP | TONEBPnuclear factor of activated T-cells 5, tonicity-responsive-HPRD12421765 
RBM12HRIHFB2091 | KIAA0765 | SWANRNA binding motif protein 12-HPRD12421765 
TOPBP1TOP2BP1topoisomerase (DNA) II binding protein 1-HPRD12421765 
ZMIZ1FLJ13541 | KIAA1224 | MIZ | RAI17 | Zimp10 | hZIMP10zinc finger, MIZ-type containing 1-HPRD12421765 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
PID_INSULIN_GLUCOSE_PATHWAY 2624All SZGR genes in this pathway
PID_PI3KCI_AKT_PATHWAY 3530All SZGR genes in this pathway
LIU_PROSTATE_CANCER_UP 9657All SZGR genes in this pathway
FULCHER_INFLAMMATORY_RESPONSE_LECTIN_VS_LPS_UP 579346All SZGR genes in this pathway
CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN 663425All SZGR genes in this pathway
DEURIG_T_CELL_PROLYMPHOCYTIC_LEUKEMIA_DN 320184All SZGR genes in this pathway
RHEIN_ALL_GLUCOCORTICOID_THERAPY_DN 362238All SZGR genes in this pathway
SENESE_HDAC3_TARGETS_UP 501327All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN 805505All SZGR genes in this pathway
PROVENZANI_METASTASIS_DN 13694All SZGR genes in this pathway
DELYS_THYROID_CANCER_DN 232154All SZGR genes in this pathway
LINDGREN_BLADDER_CANCER_CLUSTER_1_UP 12171All SZGR genes in this pathway
RODRIGUES_NTN1_AND_DCC_TARGETS 3525All SZGR genes in this pathway
ONDER_CDH1_TARGETS_2_DN 464276All SZGR genes in this pathway
KIM_GERMINAL_CENTER_T_HELPER_UP 6642All SZGR genes in this pathway
WANG_SMARCE1_TARGETS_DN 371218All SZGR genes in this pathway
KAAB_HEART_ATRIUM_VS_VENTRICLE_DN 261183All SZGR genes in this pathway
KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_UP 953554All SZGR genes in this pathway
KRIGE_RESPONSE_TO_TOSEDOSTAT_6HR_DN 911527All SZGR genes in this pathway
KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_DN 1011592All SZGR genes in this pathway
ZHENG_BOUND_BY_FOXP3 491310All SZGR genes in this pathway
ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN 940425All SZGR genes in this pathway
RUTELLA_RESPONSE_TO_CSF2RB_AND_IL4_UP 338225All SZGR genes in this pathway
RUTELLA_RESPONSE_TO_HGF_UP 418282All SZGR genes in this pathway
RUTELLA_RESPONSE_TO_HGF_VS_CSF2RB_AND_IL4_DN 245150All SZGR genes in this pathway
LEE_EARLY_T_LYMPHOCYTE_DN 5736All SZGR genes in this pathway
JISON_SICKLE_CELL_DISEASE_DN 18197All SZGR genes in this pathway
LEE_BMP2_TARGETS_UP 745475All SZGR genes in this pathway
FORTSCHEGGER_PHF8_TARGETS_UP 279155All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1387617671Ahsa-miR-138brainAGCUGGUGUUGUGAAUC
miR-1814314381A,m8hsa-miR-181abrainAACAUUCAACGCUGUCGGUGAGU
hsa-miR-181bSZAACAUUCAUUGCUGUCGGUGGG
hsa-miR-181cbrainAACAUUCAACCUGUCGGUGAGU
hsa-miR-181dbrainAACAUUCAUUGUUGUCGGUGGGUU
miR-23109711031Ahsa-miR-23abrainAUCACAUUGCCAGGGAUUUCC
hsa-miR-23bbrainAUCACAUUGCCAGGGAUUACC
miR-264184251A,m8hsa-miR-26abrainUUCAAGUAAUCCAGGAUAGGC
hsa-miR-26bSZUUCAAGUAAUUCAGGAUAGGUU
miR-433-3p3073131Ahsa-miR-433brainAUCAUGAUGGGCUCCUCGGUGU
miR-493-5p212218m8hsa-miR-493-5pUUGUACAUGGUAGGCUUUCAUU
miR-94484541Ahsa-miR-9SZUCUUUGGUUAUCUAGCUGUAUGA
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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