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Search results: You are viewing annotation results for significant SNPs from PGC2
| SNP ID | Chromosome | Pos | Allele | p | Gene | Function | Distance | MAF in 1000G | CG46 |
|---|---|---|---|---|---|---|---|---|---|
| rs75575209 | chr2 | 58138192 | AT | 1.014E-8 | VRK2 | intronic | 0.087 | ||
| rs10520163 | chr4 | 170626552 | TC | 1.02E-8 | CLCN3 | intronic | 0.4 | ||
| rs2693698 | chr14 | 99719219 | AG | 1.375E-8 | BCL11B | intronic | 0.67 | ||
| rs76869799 | chr1 | 97834525 | CG | 1.436E-7 | DPYD | intronic | 0.022 | ||
| rs12704290 | chr7 | 86427626 | AG | 1.037E-10 | GRM3 | intronic | |||
| rs14403 | chr1 | 243663893 | TC | 1.305E-7 | AKT3 | UTR3 | NM_005465:c.*4658A>G | ||
| rs56873913 | chr19 | 50091199 | TG | 2.188E-7 | PRRG2 | intronic | 0.35 | ||
| rs111294930 | chr5 | 152177121 | AG | 1.312E-9 | LINC01470 | ncRNA_intronic | 0.098 | ||
| rs2909457 | chr2 | 162845855 | AG | 4.375E-8 | SLC4A10 DPP4 | intergenic | dist=4069 dist=2900 | ||
| rs1023500 | chr22 | 42340844 | TC | 5.043E-8 | CENPM | intronic | 0.39 | ||
| rs12129573 | chr1 | 73768366 | AC | 2.346E-10 | NEGR1 LINC01360 | intergenic | dist=1020089 dist=3487 | ||
| rs190065944 | chr15 | 78859610 | AG | 7.221E-8 | CHRNA5 | intronic | |||
| chr11_46350213_D | chr11 | 46350213 | I2D | 1.967E-11 | |||||
| rs7267348 | chr20 | 48131036 | TC | 1.182E-7 | PTGIS | intronic | 0.26 | ||
| rs78322266 | chr18 | 53063676 | TG | 1.099E-8 | TCF4 | intronic | |||
| chr7_24747494_D | chr7 | 24747494 | DI3 | 3.59E-7 | |||||
| rs1498232 | chr1 | 30433951 | TC | 1.284E-9 | LOC101928460 LOC101929406 | intergenic | dist=757325 dist=52848 | 0.5 | |
| rs7405404 | chr16 | 13749859 | TC | 3.925E-10 | SHISA9 ERCC4 | intergenic | dist=415586 dist=264155 | 0.86 | |
| rs2332700 | chr14 | 72417326 | CG | 1.686E-9 | RGS6 | intronic | 0.71 | ||
| rs1702294 | chr1 | 98501984 | TC | 2.794E-17 | MIR137HG | ncRNA_intronic | 0.78 | ||
| chr2_146436222_I | chr2 | 146436222 | I2D | 1.072E-8 | |||||
| rs12903146 | chr15 | 61854663 | AG | 1.038E-9 | RORA VPS13C | intergenic | dist=333161 dist=289927 | ||
| rs6065094 | chr20 | 37453194 | AG | 5.519E-11 | PPP1R16B | intronic | 0.76 | ||
| rs6434928 | chr2 | 198304577 | AG | 1.478E-11 | SF3B1 COQ10B | intergenic | dist=4760 dist=13654 | ||
| rs77149735 | chr1 | 243555105 | AG | 4.404E-9 | SDCCAG8 | intronic | |||
| rs8082590 | chr17 | 17958402 | AG | 6.841E-9 | GID4 | intronic | |||
| rs12826178 | chr12 | 57622371 | TG | 5.297E-12 | SHMT2 | upstream | |||
| rs2535627 | chr3 | 52845105 | TC | 3.956E-11 | ITIH3 ITIH4 | intergenic | dist=2080 dist=1901 | 0.49 | |
| rs3849046 | chr5 | 137851192 | TC | 4.833E-9 | ETF1 | intronic | |||
| rs11027857 | chr11 | 24403620 | AG | 3.21E-9 | MIR8054 LUZP2 | intergenic | dist=962884 dist=114896 | ||
| chr6_84280274_D | chr6 | 84280274 | I2D | 8.574E-10 | |||||
| rs6670165 | chr1 | 177280121 | TC | 1.156E-7 | BRINP2 LOC102724661 | intergenic | dist=28563 dist=40601 | ||
| rs12421382 | chr11 | 109378071 | TC | 1.723E-7 | C11orf87 ZC3H12C | intergenic | dist=78178 dist=586016 | ||
| rs1339227 | chr6 | 73155701 | TC | 6.86E-8 | RIMS1 KCNQ5 | intergenic | dist=42856 dist=175870 | ||
| rs7907645 | chr10 | 104423800 | TG | 5.819E-11 | TRIM8 ARL3 | intergenic | dist=5724 dist=9684 | 0.22 | |
| rs832187 | chr3 | 63833050 | TC | 2.584E-8 | C3orf49 | ncRNA_intronic | |||
| rs9841616 | chr3 | 181167585 | AT | 1.654E-8 | SOX2-OT | ncRNA_intronic | |||
| rs2068012 | chr14 | 30190316 | TC | 4.142E-8 | PRKD1 | intronic | 0.36 | ||
| chr22_39987017_D | chr22 | 39987017 | I2D | 2.204E-11 | |||||
| rs12522290 | chr5 | 152797656 | CG | 2.227E-8 | LINC01470 GRIA1 | intergenic | dist=445747 dist=72428 | 0.043 | |
| rs8042374 | chr15 | 78908032 | AG | 1.865E-12 | CHRNA3 | intronic | 0.36 | ||
| rs950169 | chr15 | 84706461 | TC | 7.62E-11 | ADAMTSL3 | exonic | |||
| rs55833108 | chr10 | 104741583 | TG | 1.422E-8 | CNNM2 | intronic | |||
| rs11693094 | chr2 | 185601420 | TC | 7.131E-12 | ZNF804A | intronic | |||
| rs2053079 | chr19 | 30987423 | AG | 3.789E-9 | ZNF536 | intronic | 0.18 | ||
| rs10043984 | chr5 | 137712121 | TC | 2.176E-8 | KDM3B | intronic | |||
| chr1_8424984_D | chr1 | 8424984 | I2D | 2.025E-9 | |||||
| rs12148337 | chr15 | 70589272 | TC | 5.33E-8 | TLE3 SALRNA3 | intergenic | dist=199016 dist=318614 | 0.42 | |
| chr2_149429178_D | chr2 | 149429178 | I2D | 2.621E-8 | |||||
| rs7432375 | chr3 | 136288405 | AG | 5.274E-11 | STAG1 | intronic | |||
| rs56205728 | chr15 | 40567237 | AG | 4.92E-8 | BUB1B-PAK6 PAK6 | intronic | |||
| rs4523957 | chr17 | 2208899 | TG | 1.04E-9 | SRR | intronic | |||
| rs79212538 | chr5 | 151993104 | TG | 3.843E-8 | NMUR2 LINC01470 | intergenic | dist=208264 dist=5421 | ||
| rs2239063 | chr12 | 2511831 | AC | 5.389E-9 | CACNA1C | intronic | 0.22 | ||
| rs1501357 | chr5 | 45364875 | TC | 1.236E-8 | HCN1 | intronic | 0.4 | ||
| rs10803138 | chr1 | 243555219 | AG | 1.788E-8 | SDCCAG8 | intronic | 0.77 | ||
| rs55661361 | chr11 | 124613957 | AG | 3.678E-12 | NRGN | intronic | |||
| rs12845396 | chrX | 6029533 | AT | 3.137E-7 | NLGN4X | intronic | 0.27 | ||
| rs679087 | chr12 | 29917265 | AC | 7.058E-8 | TMTC1 | intronic | |||
| chr2_200825237_I | chr2 | 200825237 | I2D | 1.779E-14 | |||||
| rs211829 | chr7 | 110048893 | TC | 5.471E-7 | EIF3IP1 IMMP2L | intergenic | dist=448623 dist=254213 | 0.27 | |
| rs4388249 | chr5 | 109036066 | TC | 1.025E-7 | MAN2A1 | intronic | |||
| rs4391122 | chr5 | 60598543 | AG | 1.734E-13 | CTC-436P18.1 ZSWIM6 | intergenic | dist=70636 dist=29557 | 0.66 | |
| rs2905426 | chr19 | 19478022 | TG | 6.921E-9 | MAU2 GATAD2A | intergenic | dist=8459 dist=18620 | ||
| rs6466055 | chr7 | 104929064 | AC | 2.463E-9 | SRPK2 | intronic | 0.58 | ||
| rs17194490 | chr3 | 2547786 | TG | 4.865E-11 | CNTN4 | intronic | |||
| rs3735025 | chr7 | 137074844 | TC | 7.752E-9 | DGKI | UTR3 | NM_004717:c.*1122A>G | 0.14 | |
| rs3768644 | chr2 | 72361505 | AG | 1.302E-7 | CYP26B1 | intronic | |||
| rs10860964 | chr12 | 103596455 | TC | 9.921E-8 | LOC101929058 C12orf42 | intergenic | dist=34369 dist=99264 | 0.14 | |
| rs35518360 | chr4 | 103146890 | AT | 9.562E-13 | BANK1 SLC39A8 | intergenic | dist=150921 dist=25308 | ||
| rs4648845 | chr1 | 2387101 | TC | 4.033E-9 | PEX10 PLCH2 | intergenic | dist=43091 dist=11797 | ||
| rs11685299 | chr2 | 225391296 | AC | 1.109E-8 | CUL3 | intronic | |||
| rs77502336 | chr11 | 123394636 | CG | 2.008E-9 | MIR4493 GRAMD1B | intergenic | dist=142416 dist=1708 | ||
| rs12691307 | chr16 | 29939877 | AG | 1.298E-10 | KCTD13 TMEM219 | intergenic | dist=2324 dist=33474 | 0.37 | |
| rs75968099 | chr3 | 36858583 | TC | 3.386E-12 | DCLK3 TRANK1 | intergenic | dist=77231 dist=9725 | ||
| chr3_180594593_I | chr3 | 180594593 | I2D | 5.349E-11 | |||||
| rs7819570 | chr8 | 89588626 | TG | 1.899E-8 | MMP16 LOC101929709 | intergenic | dist=248909 dist=1141001 | ||
| rs7801375 | chr7 | 131567263 | AG | 2.261E-8 | PODXL LOC101928782 | intergenic | dist=325887 dist=27716 | 0.69 | |
| rs4129585 | chr8 | 143312933 | AC | 2.028E-13 | TSNARE1 | intronic | 0.79 | ||
| rs4330281 | chr3 | 17859366 | TC | 5.505E-8 | TBC1D5 LOC339862 | intergenic | dist=76967 dist=144698 | 0.61 | |
| rs11740474 | chr5 | 153680747 | AT | 3.936E-8 | GALNT10 | intronic | 0.24 | ||
| rs10791097 | chr11 | 130718630 | TG | 2.876E-12 | LOC100507431 | ncRNA_intronic | 0.6 | ||
| rs13240464 | chr7 | 110898915 | TC | 6.162E-13 | IMMP2L | intronic | 0.38 | ||
| chr1_243881945_I | chr1 | 243881945 | I2D | 3.109E-8 | |||||
| rs12887734 | chr14 | 104046834 | TG | 1.172E-13 | APOPT1 | intronic | |||
| rs9636107 | chr18 | 53200117 | AG | 9.091E-13 | TCF4 | intronic | 0.5 | ||
| rs16867576 | chr5 | 88746331 | AG | 1.358E-8 | MEF2C-AS1 MIR3660 | intergenic | dist=418138 dist=566107 | 0.17 | |
| rs10503253 | chr8 | 4180844 | AC | 2.694E-8 | CSMD1 | intronic | |||
| rs6704768 | chr2 | 233592501 | AG | 3.148E-12 | GIGYF2 | intronic | |||
| rs73229090 | chr8 | 27442127 | AC | 1.952E-8 | EPHX2 CLU | intergenic | dist=39688 dist=12307 | ||
| rs59979824 | chr2 | 193848340 | AC | 1.079E-8 | PCGEM1 LOC101927406 | intergenic | dist=206715 dist=1360653 | ||
| rs9420 | chr11 | 57510294 | AG | 6.652E-8 | TMX2-CTNND1 | ncRNA_intronic | 0.69 | ||
| rs115329265 | chr6 | 28712247 | AG | 3.861E-32 | ZBED9 LINC01623 | intergenic | dist=157135 dist=115155 | 0.26 | |
| rs117074560 | chr6 | 96459651 | TC | 1.661E-8 | MANEA FUT9 | intergenic | dist=402323 dist=4194 | ||
| rs11191419 | chr10 | 104612335 | AT | 9.235E-18 | CYP17A1 BORCS7 | intergenic | dist=15045 dist=1632 | ||
| rs4766428 | chr12 | 110723245 | TC | 7.093E-10 | ATP2A2 | intronic | |||
| rs4240748 | chr12 | 92246786 | CG | 1.028E-7 | DCN LINC01619 | intergenic | dist=669885 dist=131966 | 0.47 | |
| rs1106568 | chr4 | 176861301 | AG | 1.145E-8 | GPM6A | intronic | |||
| rs6002655 | chr22 | 42603814 | TC | 1.475E-9 | TCF20 | intronic | |||
| rs2973155 | chr5 | 152608619 | TC | 1.016E-9 | LINC01470 GRIA1 | intergenic | dist=256710 dist=261465 | 0.26 | |
| rs11139497 | chr9 | 84739941 | AT | 3.09E-9 | SPATA31D1 RASEF | intergenic | dist=129770 dist=854559 | ||
| chr10_104957618_I | chr10 | 104957618 | I2D | 1.036E-13 | |||||
| rs4702 | chr15 | 91426560 | AG | 2.298E-12 | FURIN | UTR3 | NM_002569:c.*1452A>G NM_001289823:c.*1452A>G NM_001289824:c.*1452A>G | ||
| rs9607782 | chr22 | 41587556 | AT | 6.763E-12 | EP300-AS1 | ncRNA_intronic | |||
| rs715170 | chr18 | 53795514 | TC | 3.465E-8 | LINC01539 | ncRNA_intronic | |||
| rs7523273 | chr1 | 207977083 | AG | 1.609E-7 | MIR29B2 LOC148696 | intergenic | dist=1215 dist=14641 | 0.26 | |
| rs11682175 | chr2 | 57987593 | TC | 2.543E-12 | CCDC85A VRK2 | intergenic | dist=1374284 dist=147193 | 0.35 | |
| rs140505938 | chr1 | 150031490 | TC | 9.337E-10 | OTUD7B VPS45 | intergenic | dist=48804 dist=7860 | ||
| rs72934570 | chr18 | 53533189 | TC | 3.667E-12 | TCF4 LINC01416 | intergenic | dist=229965 dist=15730 | ||
| rs2514218 | chr11 | 113392994 | TC | 4.091E-10 | DRD2 TMPRSS5 | intergenic | dist=46993 dist=165274 | ||
| chr18_52749216_D | chr18 | 52749216 | I2D | 1.745E-11 | |||||
| rs8044995 | chr16 | 68189340 | AG | 3.268E-8 | NFATC3 | intronic | |||
| rs12325245 | chr16 | 58681393 | AT | 1.149E-8 | CNOT1 SLC38A7 | intergenic | dist=17603 dist=17620 | 0.17 | |
| rs9922678 | chr16 | 9946319 | AG | 6.721E-9 | GRIN2A | intronic | |||
| rs215411 | chr4 | 23423603 | AT | 1.224E-8 | MIR548AJ2 | ncRNA_intronic | |||
| rs1378559 | chrX | 21380266 | TC | 1.679E-11 | RPS6KA3 CNKSR2 | intergenic | dist=1095516 dist=12270 | 0.087 | |
| rs75059851 | chr11 | 133822569 | AG | 1.232E-11 | IGSF9B | intronic | 0.054 | ||
| chr5_140143664_I | chr5 | 140143664 | I12D | 3.596E-7 | |||||
| rs324017 | chr12 | 57487814 | AC | 2.128E-7 | NAB2 | intronic | 0.54 | ||
| rs7893279 | chr10 | 18745105 | TG | 3.562E-11 | CACNB2 | intronic | 0.065 | ||
| rs11210892 | chr1 | 44100084 | AG | 4.97E-10 | PTPRF KDM4A | intergenic | dist=10741 dist=15713 | ||
| rs2007044 | chr12 | 2344960 | AG | 2.625E-17 | CACNA1C | intronic | 0.61 | ||
| rs2851447 | chr12 | 123665113 | CG | 2.189E-14 | MPHOSPH9 | intronic | |||
| rs5937157 | chrX | 68377126 | TG | 5.742E-11 | EFNB1 PJA1 | intergenic | dist=315120 dist=3455 | 0.17 | |
| chr7_2025096_I | chr7 | 2025096 | DI3 | 6.123E-14 | |||||
| rs6984242 | chr8 | 60700469 | AG | 1.758E-9 | TOX CA8 | intergenic | dist=668702 dist=400954 | ||
| rs36068923 | chr8 | 111485761 | AG | 1.045E-10 | KCNV1 LINC01608 | intergenic | dist=498802 dist=464158 | 0.24 | |
| rs6704641 | chr2 | 200164252 | AG | 3.397E-8 | SATB2 | intronic |
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