Pulmonary Arterial Hypertension KnowledgeBase (bioinfom_tsdb)
bioinfom_tsdb
Pulmonary Arterial Hypertension KnowledgeBase
General information | Literature | Expression | Regulation | Variant | Interaction

Basic Information

Gene ID

6598

Name

SMARCB1

Synonymous

BAF47|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS;SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1;SMARCB1;SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

Definition

BRG1-associated factor 47|SNF5 homolog|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1|SWI/SNF-related matrix-associated protein|hSNF5|integrase interactor 1 protein|malignant rhabdoid tumor suppressor|protein

Position

22q11.23|22q11

Gene Type

protein-coding

Gene Expression:

TCGA pan-cancer expression
Human Primary Tumor Samples (U95)
Human U133A/GNF1H Gene Atlas

TCGA pan-cancer expression summary

   | Top |

TCGA pan-cancer gene expression summary; We extracted RNASeqV2 normalized gene expression data from TCGA using the R package TCGA-Assembler. All public data files on TCGA DCC data server were gathered on Jan-05-2015.
Precomputed P-values for average expression difference between tumor and normal samples in pan-cancer
BLCA: 3.80740619247641e-05 BRCA: 1.46180364992509e-19 COAD: 4.81387569720964e-06
HNSC: 7.73596320167044e-11 KICH: 1.5636458302994e-09 KIRC: 2.66235074726281e-08
LUAD: 4.88592620083755e-37 LUSC: 1.41789719435894e-46 PRAD: 0.00274589901284922
THCA: 8.81293581099092e-07 UCEC: 0.0471780531037036  

Human Primary Tumor Samples (U95)

   | Top |

Click to view sample information

Human U133A/GNF1H Gene Atlas

   | Top |

')