| General information | Literature | Expression | Regulation | Variant | Interaction |
|
Basic Information |
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|---|---|
Gene ID | 6598 |
Name | SMARCB1 |
Synonymous | BAF47|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS;SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1;SMARCB1;SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 |
Definition | BRG1-associated factor 47|SNF5 homolog|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1|SWI/SNF-related matrix-associated protein|hSNF5|integrase interactor 1 protein|malignant rhabdoid tumor suppressor|protein |
Position | 22q11.23|22q11 |
Gene Type | protein-coding |
Gene Regulation: | Upstream microRNAs Transcription Factors Post Transcriptional Modification From dbPTM Methylation Profile From DiseaseMeth database |
Experimentally verified miRNA from miRTarBase [Top] | |||
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Transcription Factors [Top] |
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Regulation From TransFac database |
BAF47(h) + p53(h) <==> BAF47(h):p53(h) (binding) | BAF47(h) + BAF155(h) + BRG1(h) + p53(h) <==> BAF47(h):BAF155(h):BRG1(h):p53(h) (binding) | BAF47(h) + c-Myc(h) <==> BAF47(h):c-Myc(h) (binding) | BAF47(h) + c-Ets-2(h) <==> BAF47(h):c-Ets-2(h) (binding) | BAF47(h) + BAF57(h) <==> BAF47(h):BAF57(h) (binding) | BAF47(h) + BAF155(h) + BAF170(h) + Brm(h) + BRG1(h) + MCPH1(m.s.) <==> BAF47(h):BAF155(h):BAF170(h):Brm(h):BRG1(h):MCPH1(m.s.) (binding) | BAF47(h) + BAF170(h) + MCPH1(m.s.) <==> BAF47(h):BAF170(h):MCPH1(m.s.) (binding) | BAF47(h) + Brm(h) + BRG1(h) + BAF155(h) + BAF170(h) <==> BAF47(h):Brm(h):BRG1(h):BAF155(h):BAF170(h) (binding) | BAF47(h) + BAF53a(h) + BAF155(h) + BAF170(h) + RbAp48(h) + RbAp46(h) + hdac2(h) + sin3a(h) + ING2(h) <==> BAF47(h):BAF53a(h):BAF155(h):BAF170(h):RbAp48(h):RbAp46(h):hdac2(h):sin3a(h):ING2(h) (binding) | SMARCB1(h) --> BAF47(h) (expression). | IGFBP-7(h) --> BAF47(h) (increase of abundance) | c-Myc(h) + BAF47-isoformA(h) <==> c-Myc(h):BAF47-isoformA(h) (binding) | BAF47-isoformA(h) + c-Myc(h) <==> BAF47-isoformA(h):c-Myc(h) (binding) | BAF47-isoformA(h) + c-Myc(m) <==> BAF47-isoformA(h):c-Myc(m) (binding) | SMARCB1(h) --> BAF47-isoformA(h) (expression). | SMARCB1(h) --> BAF47-isoformB(h) (expression). |
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Post Transcriptional Modification [Top] | |||
There is no record for SMARCB1 | |||
Methylation Profile [Top] | ||
|
Chromosome |
Location |
Source |
|---|---|---|
chr22 |
Promoter: 22457650 - 22459650 | Agilent_014791 |
chr22 |
Promoter: 22457650 - 22459650 | GoldenGate_Methylation_Cancer_Panel_I |
chr22 |
Promoter: 22457650 - 22459650 | GoldenGate_Methylation_Cancer_Panel_I |
chr22 |
Promoter: 22457650 - 22459650 | GSE27584 |
chr22 |
Promoter: 22457650 - 22459650 | GSE27584 |
chr22 |
Promoter: 22457650 - 22459650 | Agilent_014791_44K |
chr22 |
Promoter: 22457650 - 22459650 | Agilent_014791 |