Bioinformatics and Systems Medicine Laboratory
General information | Expression | Regulation | Mutation | Interaction

Basic Information

Gene ID

4790

Name

NFKB1

Synonymous

EBP-1|KBF1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50;nuclear factor of kappa light polypeptide gene enhancer in B-cells 1;NFKB1;nuclear factor of kappa light polypeptide gene enhancer in B-cells 1

Definition

DNA binding factor KBF1|DNA-binding factor KBF1|NF-kappabeta|nuclear factor NF-kappa-B p105 subunit|nuclear factor NF-kappa-B p50 subunit|nuclear factor kappa-B DNA binding subunit

Position

4q24

Gene Type

protein-coding

Gene Regulation:

Transcription Factors
Post Transcriptional Modification From dbPTM
Methylation Profile From DiseaseMeth database

Transcription Factors

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Regulation From TransFac database

NF-kappaB1(h) + ATP --IKK-beta(h)--> NF-kappaB1(h){p} + ADP (phosphorylation)
c-Rel(h) + NF-kappaB1(h) <==> c-Rel(h):NF-kappaB1(h) (binding).
c-Rel(m) + NF-kappaB1(h) <==> c-Rel(m):NF-kappaB1(h) (binding).
NF-kappaB1(h) + IkappaB-beta(h) <==> NF-kappaB1(h):IkappaB-beta(h) (binding).
IkappaB-beta(c) + NF-kappaB1(h) <==> IkappaB-beta(c):NF-kappaB1(h) (binding).
NF-kappaB1(h) + NF-kappaB1-p50(h) <==> NF-kappaB1-p50(h):NF-kappaB1(h) (binding).
v-Rel(REVT) + NF-kappaB1(h) <==> v-Rel(REVT):NF-kappaB1(h) (binding).
NF-kappaB1(h) + IkappaB-alpha(h) <==> NF-kappaB1(h):IkappaB-alpha(h) (binding).
IkappaB-beta(m) + NF-kappaB1(h) <==> IkappaB-beta(m):NF-kappaB1(h) (binding).
c-Rel(c) + NF-kappaB1(h) <==> c-Rel(c):NF-kappaB1(h) (binding).
Cot(h) + NF-kappaB1(h) <==> Cot(h):NF-kappaB1(h) (binding)
NF-kappaB1(h) + ATP --CSN(h)--> NF-kappaB1(h){p} + ADP (phosphorylation)
NF-kappaB1(h) --> NF-kappaB1-p50(h) (processing)
NF-kappaB1(h) + PARP(h) <==> NF-kappaB1(h):PARP(h) (binding)
IkappaB-alpha(h) + NF-kappaB1(h) + RelA-p65(h) + rps3(h) <==> IkappaB-alpha(h):NF-kappaB1(h):RelA-p65(h):rps3(h) (binding)
rps3(h) + RelA-p65(h) + NF-kappaB1(h) <==> rps3(h):RelA-p65(h):NF-kappaB1(h) (binding)
NF-kappaB1(h) + 2 ATP --> NF-kappaB1(h){pS927}{pS932} + 2 ADP (phosphorylation)
NF-kappaB1(h) + GSK3beta(h) <==> NF-kappaB1(h):GSK3beta(h) (binding)
RelA-p65(h) + NF-kappaB1(h) <==> RelA-p65(h):NF-kappaB1(h) (binding)
NF-kappaB1(h) --> NF-kappaB1(h) (translocation)
NF-kappaB1(h) --> Ig-kappa(m) (DNA binding).
NF-kappaB1(h) --> Irf1(m) (DNA binding).
NF-kappaB1(h) --> Irf8(m) (DNA binding).
NF-kappaB1(h) --> DEFB4(h) (DNA binding).
NF-kappaB1(h) --> IL8(h) (DNA binding).
NF-kappaB1(h) --> IL28B(h) (DNA binding).
NF-kappaB1(h) --> IL29(h) (DNA binding).
NFKB1(h) --> NF-kappaB1(h) (expression).
TNF-alpha(h) --/ NF-kappaB1(h) (decrease of abundance)
Murr1(h) --/ NF-kappaB1(h) (decrease of abundance)
IL-17A(h) --> NF-kappaB1(h) (increase of abundance)
NF-kappaB1(h) --> NF-kappaB1(h) (translocation)
IFNalpha(m.s.) --> NF-kappaB1(h) (increase of abundance)
Jagged1(h) --> NF-kappaB1(h) (increase of abundance)
NF-kappaB1-isoform1(h) + ATP --IKK-beta(m.s.)--> ADP + NF-kappaB1-isoform1(h){p} (phosphorylation)
NF-kappaB1-isoform1(h) --> p50(h) (processing)
NF-kappaB1-isoform1(h) --> p50(h) + protein remnants (degradation)
NF-kappaB1-isoform1(h) + Bcl-3(h) <==> NF-kappaB1-isoform1(h):Bcl-3(h) (binding)
NF-kappaB1-isoform1(h) + GR(h) <==> NF-kappaB1-isoform1(h):GR(h) (binding)
NF-kappaB1-isoform1(h) --> p50(h) + protein remnants (processing)
NF-kappaB1-isoform1(h) --> protein remnants (degradation)
NF-kappaB1-isoform1(h) + ATP --> NF-kappaB1-isoform1(h){pS927} + ADP (phosphorylation)
NF-kappaB1-isoform1(h) + ATP --> NF-kappaB1-isoform1(h){pS932} + ADP (phosphorylation)
NF-kappaB1-isoform1(h) + n ubiquitin(h) --> NF-kappaB1-isoform1(h){ub}n (ubiquitination)
beta-TrCP1(m.s.) + NF-kappaB1-isoform1(h) <==> beta-TrCP1(m.s.):NF-kappaB1-isoform1(h) (binding)
HOS(m.s.) + NF-kappaB1-isoform1(h) <==> HOS(m.s.):NF-kappaB1-isoform1(h) (binding)
NFKB1(h) --> NF-kappaB1-isoform1(h) (expression).
IKK-beta(m.s.) --> NF-kappaB1-isoform1(h) (increase of processing)
IGFBP-2(h) --> NF-kappaB1-isoform1(h) (increase of abundance)
NF-kappaB1-isoform2(h) + ATP --Cot(h){p}--> NF-kappaB1-isoform2(h){p} + ADP (phosphorylation)
NF-kappaB1-isoform2(h) + Cot(h) <==> NF-kappaB1-isoform2(h):Cot(h) (binding)
NF-kappaB1-isoform2(h) + ATP --> NF-kappaB1-isoform2(h){pS933} + ADP (phosphorylation)
NFKB1(h) --> NF-kappaB1-isoform2(h) (expression).
NFKB1(h) --> NF-KB1(h) (expression).
hsa-miR-9 --/ NF-KB1(h) (increase of mRNA decay).

Post Transcriptional Modification From dbPTM

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Location (AA)

PTM type

Literature

Database

337Phosphoserine (by PKA) (Potential).Swiss-Prot 53.0
927Phosphoserine (Probable).Swiss-Prot 53.0
923Phosphoserine (IKK-beta;IKK)11158290;10469655Phospho.ELM 6.0
893Phosphoserine8522173Phospho.ELM 6.0
903Phosphoserine (GSK-3beta)12871932Phospho.ELM 6.0
907Phosphoserine (GSK-3beta)12871932Phospho.ELM 6.0

Methylation Profile From DiseaseMeth database

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Chromosome

Location

Source

chr4

Promoter: 103640018 - 103642018Agilent_014791

chr4

Promoter: 103640018 - 103642018GoldenGate_Methylation_Cancer_Panel_I

chr4

Promoter: 103640018 - 103642018GSE27584

chr4

Promoter: 103640018 - 103642018Agilent_014791_44K


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