All CNVs
| CNV | Gene | p-value | Validation | Samples (Case/Ctrl) |
Phenotype | PubMed ID |
|---|---|---|---|---|---|---|
| 5q21.3 (DEL) | (RAB9P1) | 3.80e-4 | Yes (Cross Studies) | 3243 / 2802 | AD | 28696413 |
| 8p23.2 (DEL) | CSMD1 | 3.80e-4 | Yes (Cross Studies) | |||
| 14q32.33 (DEL) | abPartsa | 4.00e-3 | Yes (Cross Studies) | |||
| 22q11.21 (DUP) | GGT2 | 1.40e-2 | Yes (Cross Studies) | |||
| 9p21.1 (DEL) | LINGO2 | 1.70e-2 | Yes (Cross Studies) | |||
| 9p13.1 (DEL) | CNTNAP3 | 3.00e-2 | Yes (Cross Studies) | |||
| 6p21.32 (DEL) | HLA-DRB5, HLA-DRB1 | 3.00e-2 | Yes (Cross Studies) | |||
| 16p11.2 (DUP) | (TP53TG3D) | 3.50e-2 | Yes (Cross Studies) | |||
| 12p13.2 (DUP) | PRB1, PRB2, PRB3, PRB4 | 5.00e-2 | Yes (Cross Studies) | |||
| 16q12.2 | CES1, CES1P1 | 4.50e-3 | Yes (p=0.051) | 1025 / 2802 | AD | 24512105 |
| 9p21.2 | LING02 | 1.90e-3 | NA | |||
| 11q14.2 (DEL) | ME3 | 4.30e-3 | NA | 283 / 75 | AD | 22732324 |
| 6q14.1 (DUP) | - | 1.04e-6 | Yes (qPCR) | 1140 / 1348 | AD | 22702843 |
| 5q13.2(Dosage) | SMA4, SERF1, SERF1B, SMN2, SMA3, NAIP, GTF2H2, GTF2H2D, OCLN | 3.37e-4 | NA | |||
| 12p11 | FGD4 | 8.13e-3 | Yes (P=4.17e-2) | 972 / 1314 | AD | 22295116 |
| 2p22 | LTBP1 | 2.27e-2 | Yes (p=8.87e-3) | |||
| 18q12.3 (DEL) | (LOC647946, KC6) | 2.20e-8 | Yes (Cross Studies) | 1601 / 3551 | OD | 25345593 |
| 1q21.3 (DUP) | LCE3B, LCE3C | 9.40e-7 | Yes (Cross Studies) | |||
| Xq28 (DEL) | (HMGB3, GPR50) | 2.70e-6 | Yes (Cross Studies) | |||
| Xq28 (DEL) | (VBP1, RAB39B) | 1.70e-4 | Yes (Cross Studies) | |||
| 19q12 (DUL) | (LOC100101266, LOC148189) | 2.00e-4 | Yes (Cross Studies) | |||
| 20q11.21 (Both) | (FRG1B, DEFB115) | 2.00e-4 | Yes (Cross Studies) | |||
| 10q26.12 (DEL) | PPAPDC1A | 5.00e-4 | Yes (Cross Studies) | |||
| 18q12.3 (DEL) | (SETBP1, SLC14A2) | 5.00e-4 | Yes (Cross Studies) | |||
| 6q26 (Both) | (PLG, MAP3K4) | 7.00e-4 | Yes (Cross Studies) | |||
| 6q13 (DUP) | (CD109, COL12A1) | 8.00e-4 | Yes (Cross Studies) | |||
| 22q13.1(DEL) | APOBEC3A, APOBEC3B | 4.00e-2 | NA | 300 / ? | AD | 21995620 |
| 20q13.33 (DEL) | (BHLHE23, HAR1B) | 5.02e-5 | NA | 116 / 1022 | AD | 21790672 |
| 3p26.1(DEL) | (GRM7) | 6.29e-3 | NA | 77 / 2812 | ND | 27711239 |
| NSF CNV | NSF | 1.29e-2 | Yes (p=7.1e-3) | 359 / 356 | CD | 27498889 |