Resources
Resources for Addiction
National Institute on Drug Abuse
National Institute on Alcohol Abuse and Alcoholism
U.S. Department of Health & Human Services opioids crisis
Substance Abuse and Mental Health Services Administration
U.S. Food & Drug Administration
Substance Abuse and Mental Health Services Administration
UK Biobank
PubMed
Data Sources for Addiction
GWAS Catalog
GWASdb2
PheWAS
Gene Expression Omnibus
GTEx(The Genotype-Tissue Expression)
Atlas of the developing human brain
Psychiatric Genomics Consortium
DrugBank database
Comparative Toxicogenomics Database
ENCODE: Encyclopedia of DNA Elements
Analysis Resources
| Tool | Description | Link |
|---|---|---|
| VEGAS2 | Versatile Gene-based Association Study version 2 | https://vegas2.qimrberghofer.edu.au/ |
| Sherlock | Discover disease genes in GWAS using eQTL signature matching | http://sherlock.ucsf.edu/ |
| Pascal | Rigorous gene and pathway analysis of GWAS | https://www2.unil.ch/cbg/index.php?title=Pascal |
| MetaXcan | MetaXcan is a set of tools to perform integrative gene mapping studies. | https://github.com/hakyimlab/MetaXcan |
| FUMA GWAS | Functional Mapping and Annotation of Genome-Wide Association Studies. | http://fuma.ctglab.nl/ |
| GSMR software | Generalised Summary-data-based Mendelian Randomisation. | http://cnsgenomics.com/software/gsmr/ |
| METAL software | Meta-analysis of genomewide association scans. | http://genome.sph.umich.edu/wiki/METAL_Program |
| MAGMA software | Generalized gene-set analysis of GWAS data. | https://ctg.cncr.nl/software/magma |
| PRSice | Polygenic score analysis. | https://choishingwan.github.io/PRSice/ |
| LDSC | LD score regression software. | https://github.com/bulik/ldsc |