| VEGAS2 | Versatile Gene-based Association Study version 2 | vegas2.qimrberghofer.edu.au |
| Sherlock | Discover disease genes in GWAS using eQTL signature matching | sherlock.ucsf.edu |
| Pascal | Rigorous gene and pathway analysis of GWAS | unil.ch/cbg/index.php?title=Pascal |
| MetaXcan | Integrative gene mapping studies tools | github.com/hakyimlab/MetaXcan |
| FUMA GWAS | Functional Mapping and Annotation of GWAS | fuma.ctglab.nl |
| GSMR | Generalised Summary-data-based Mendelian Randomisation | cnsgenomics.com/software/gsmr |
| METAL | Meta-analysis of genomewide association scans | genome.sph.umich.edu/wiki/METAL_Program |
| MAGMA | Generalized gene-set analysis of GWAS data | ctg.cncr.nl/software/magma |
| PRSice | Polygenic score analysis | choishingwan.github.io/PRSice |
| LDSC | LD score regression software | github.com/bulik/ldsc |
