Gene: SNHG18

100505806
-
small nucleolar RNA host gene 18
ncRNA
5p15.31
Ensembl:ENSG00000250786
NC_000005.10
SNP Mapped
1   ANCO-SNPs
AD
0   
9.942e-2 (AD)  3.825e-1 (ND)   (Frontal_Cortex)
1.652e-2 (AD)  8.744e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs930076chr5:9550530 (GRCh38.p7)T>Calcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
LITAF0.773
H2AFJ0.768
FAM114A10.759
NPC20.754
DERA0.745
GLIPR20.745
AAMDC0.744
TSPO0.737
SEPT100.729
SLC35D20.727

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
KCNQ4-0.626
GRIN2B-0.619
CCKBR-0.619
PLXNA4-0.611
CDH22-0.604
NDST3-0.598
MLIP-0.592
TCERG1L-0.591
BEAN1-0.591
MARCH4-0.59

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal