Gene: LINC00989

100506035
-
long intergenic non-protein coding RNA 989
ncRNA
4q21.21
Ensembl:ENSG00000250334
NC_000004.12
SNP Mapped
1   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
9.099e-1 (AD)  4.687e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs2165387chr4:79570666 (GRCh38.p7)T>Calcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
SCGB1D10.701
OR4E10.663
OR6K20.65
CSH10.642
OR5K40.642
TAAR10.638
OR4K170.636
POM121L120.635
OR5H10.632
SULT1C30.631

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
NDP-0.351
TM7SF2-0.33
SLC1A4-0.319
SORCS2-0.314
CDKL3-0.299
HHATL-0.298
GRM3-0.293
FOXRED2-0.293
ABCB8-0.29
ADCY2-0.29

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal