Gene: LINC00348

100885781
-
long intergenic non-protein coding RNA 348
ncRNA
13q21.33
Ensembl:ENSG00000226846
NC_000013.11
SNP Mapped
1   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
4.183e-1 (AD)  6.213e-2 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs809164chr13:71055978 (GRCh38.p7)T>A / T>C / T>Galcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
UBD0.476
EFCAB30.459
TMEM1740.443
KRTAP10-80.431
OR5L20.431
OR5T30.43
ADGB0.427
TRAPPC3L0.419
OR9G10.413
OR52N20.409

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
PYGM-0.267
CXCL14-0.265
HGFAC-0.257
CHRNA2-0.253
SLC29A4-0.249
ARSF-0.242
ELN-0.229
NPAS1-0.226
MUC12-0.225
CALB2-0.224

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal