Gene: LINC00269

100996279
CXorf62|NCRNA00269
long intergenic non-protein coding RNA 269
ncRNA
Xq13.1
Ensembl:ENSG00000215162 UniprotKB:Q8N2A0
NC_000023.11
SNP Mapped
1   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
NA (AD)  NA (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs943166chrX:69191602 (GRCh38.p7)C>Talcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
ATG9B0.535
WNT10A0.516
KLHL350.503
PCP40.501
SLC7A40.5
DAW10.499
HTR60.496
DYDC20.49
ALOX12B0.489
NEK100.486

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
YES1-0.366
CARD8-0.357
CD7-0.351
MYL3-0.349
LYN-0.347
RNF135-0.347
PELI2-0.345
ARHGAP42-0.343
RAI14-0.341
PRKD3-0.337

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal