Gene info: ID 101929244

Gene: CASC20

GENE ID: 101929244

Synonyms: -

Description: cancer susceptibility 20

Gene type: ncRNA

Location: 20p12.3

dbXrefs: Ensembl:ENSG00000229876

RefSeq: NC_000020.11

Retrived from: SNP Mapped

SNPs: 3 ANCO-SNPs

Phenotype: AD

# Publications: 0

Sherlock p-value : NA (AD) NA (ND) (Frontal_Cortex)

Pascal p-value : NA (AD) NA (ND)

ANCO-SNPs

SNP ID	Position	Alleles	Trait	Variation Type
rs6117294	chr20:6490158 (GRCh38.p7)	T>G	alcohol dependence	SNV(Single Nucleotide Variation)
rs1970008	chr20:6487724 (GRCh38.p7)	A>G	alcohol dependence	SNV(Single Nucleotide Variation)
rs10485705	chr20:6487614 (GRCh38.p7)	G>T	alcohol dependence	SNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

There is no DrugBank record for this gene !

There is no CTD record for this GENE !

GO/Pathway

GO ID	GO Term	Qualifier	Evidence	PubMed

GO ID	GO Term	Qualifier	Evidence	PubMed

GO ID	GO Term	Qualifier	Evidence	PubMed

KEGG ID	KEGG Term

Reactome ID	Reactome Term	Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID	Title (Year)	Author	Journal