Gene: GACAT1

104326057
LINC00876
gastric cancer associated transcript 1
ncRNA
2q12.3
Ensembl:ENSG00000232991
NC_000002.12
SNP Mapped
1   ANCO-SNPs
ND
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
NA (AD)  NA (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs328026chr2:107764075 (GRCh38.p7)C>Tnicotine dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
CDY2A0.991
OR5F10.991
TSPY30.991
OR4C460.991
OR5M10.991
OR5T20.991
KRTAP6-20.991
OR4C120.991
OR5W20.991
MAGEB50.991

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
SLC1A4-0.279
FUT9-0.279
HHATL-0.276
ADCY2-0.271
TMEM221-0.269
PCDH9-0.265
PLA2G6-0.262
C16orf95-0.261
SORCS2-0.259
CORO2B-0.259

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal