Gene info: ID 105378934

Gene: LINC01780

GENE ID: 105378934

Synonyms: -

Description: long intergenic non-protein coding RNA 1780

Gene type: ncRNA

Location: 1p12

dbXrefs: Ensembl:ENSG00000232650

RefSeq: NC_000001.11

Retrived from: SNP Mapped

SNPs: 3 ANCO-SNPs

Phenotype: ND|AD

# Publications: 0

Sherlock p-value : NA (AD) NA (ND) (Frontal_Cortex)

Pascal p-value : NA (AD) NA (ND)

ANCO-SNPs

SNP ID	Position	Alleles	Trait	Variation Type
rs838530	chr1:119354876 (GRCh38.p7)	T>C	alcohol dependence	SNV(Single Nucleotide Variation)
rs838532	chr1:119354204 (GRCh38.p7)	T>C	alcohol dependence	SNV(Single Nucleotide Variation)
rs699771	chr1:119329354 (GRCh38.p7)	C>T	alcohol dependence\|nicotine dependence	SNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

There is no DrugBank record for this gene !

There is no CTD record for this GENE !

GO/Pathway

GO ID	GO Term	Qualifier	Evidence	PubMed

GO ID	GO Term	Qualifier	Evidence	PubMed

GO ID	GO Term	Qualifier	Evidence	PubMed

KEGG ID	KEGG Term

Reactome ID	Reactome Term	Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID	Title (Year)	Author	Journal