Gene: PCAT4

118425
GDEP|PCA4|PCAN1
prostate cancer associated transcript 4
ncRNA
4q21.21
Ensembl:ENSG00000251321 MIM:609717
NC_000004.12
SNP Mapped
1   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
8.628e-1 (AD)  6.860e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs10031299chr4:79832638 (GRCh38.p7)T>Calcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
OR14J10.912
OR1I10.879
OR2H10.875
MBL20.871
TRIM600.868
ADAM70.864
RNASE90.857
NLRP130.857
OR4K30.856
NLRP80.845

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
OMG-0.315
HDDC3-0.311
SPAG8-0.309
KLHDC9-0.29
SFTPD-0.284
TMEM221-0.279
TMEM187-0.272
OGDHL-0.272
ST3GAL4-0.271
ZNF575-0.269

Drugs/Compounds

    There is no DrugBank record for this gene !

ID Drug Name Action PubMed
D014635Valproic AcidValproic Acid results in decreased methylation of PCAT4 gene29154799

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal