Gene: LINC00479

150135
C21orf129|PRED76
long intergenic non-protein coding RNA 479
ncRNA
21q22.3
Ensembl:ENSG00000236384 UniprotKB:Q96M42
NC_000021.9
SNP Mapped
1   ANCO-SNPs
ND
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
4.415e-1 (AD)  5.409e-2 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs13051745chr21:41713499 (GRCh38.p7)C>Tnicotine dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
OR5M30.767
SHOX0.721
OR5A10.672
OR5AK20.665
SLC7A130.643
KRTAP4-20.643
OR2J10.637
OR5K40.626
CSH10.626
OR5T30.62

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
MYADML2-0.272
TMEM179-0.241
KCNIP3-0.241
BCL11A-0.239
RS1-0.237
ZNF835-0.236
RASL10B-0.235
DUSP19-0.234
ATOH7-0.23
NEUROD6-0.228

Drugs/Compounds

    There is no DrugBank record for this gene !

ID Drug Name Action PubMed
D016604Aflatoxin B1Aflatoxin B1 results in decreased methylation of LINC00479 gene27153756
D001280AtrazineAtrazine results in increased expression of LINC00479 mRNA22378314
C051904dinophysistoxin 1dinophysistoxin 1 results in decreased expression of LINC00479 mRNA28939011
D010936Plant ExtractsPlant Extracts results in decreased expression of LINC00479 mRNA23557933
C013320tris(2-butoxyethyl) phosphatetris(2-butoxyethyl) phosphate affects the expression of LINC00479 mRNA29024780
D014635Valproic AcidValproic Acid affects the expression of LINC00479 mRNA25979313

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal