Gene: LINC00189

193629
C21orf109|NCRNA00189
long intergenic non-protein coding RNA 189
ncRNA
21q21.3
Ensembl:ENSG00000215533
NC_000021.9
SNP Mapped
2   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
5.774e-1 (AD)  8.043e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs2832278chr21:29239169 (GRCh38.p7)A>Galcohol dependenceSNV(Single Nucleotide Variation)
rs11909745chr21:29238300 (GRCh38.p7)A>Galcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
TFPI20.775
SLAMF60.764
PARP150.762
MROH50.754
FCRL30.744
KLRF10.74
OR51F10.737
GADL10.733
GZMA0.732
SLAMF70.73

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
FUT9-0.467
B3GALT1-0.462
BDH1-0.438
KCNA2-0.437
CYP46A1-0.428
SLC1A4-0.415
CDS1-0.414
RNFT2-0.411
CHST1-0.408
CORO2B-0.407

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal