Gene: LINC00319

284836
C21orf125|NCRNA00319|PRED49
long intergenic non-protein coding RNA 319
ncRNA
21q22.3
Ensembl:ENSG00000188660
NC_000021.9
SNP Mapped
1   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
5.883e-1 (AD)  7.907e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs9680399chr21:43451183 (GRCh38.p7)G>Aalcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
SZT20.665
DNMT3A0.642
NBPF150.637
UBR40.632
KMT2D0.616
GGCX0.613
NBEAL20.613
FAM160B20.612
ZNF5870.609
CTC10.609

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
KCNJ16-0.23
SLC22A6-0.228
RERGL-0.227
FGA-0.223
SMN2-0.215
ODAM-0.214
FGB-0.214
S100A1-0.213
GSDMC-0.213
C6orf52-0.206

Drugs/Compounds

    There is no DrugBank record for this gene !

ID Drug Name Action PubMed
D002945CisplatinCisplatin results in decreased expression of LINC00319 mRNA27392435
C000944dicrotophosdicrotophos results in increased expression of LINC00319 mRNA28302478
C544151jinfukangjinfukang results in increased expression of LINC00319 mRNA27392435
D010100OxygenOxygen deficiency results in increased expression of LINC00319 mRNA24236059
D010936Plant ExtractsPlant Extracts results in decreased expression of LINC00319 mRNA23557933
C013320tris(2-butoxyethyl) phosphatetris(2-butoxyethyl) phosphate affects the expression of LINC00319 mRNA29024780
D014635Valproic AcidValproic Acid results in increased methylation of LINC00319 gene29154799

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal