Gene: LINC00652

29075
HSPC072
long intergenic non-protein coding RNA 652
ncRNA
20p11.23
Ensembl:ENSG00000179935
NC_000020.11
SNP Mapped
1   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
8.536e-2 (AD)  6.532e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs6081377chr20:18796142 (GRCh38.p7)T>Calcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
CEP190.81
SHROOM20.786
LYPD50.778
TUBGCP40.777
VSTM2A0.775
GDPD10.774
TBC1D300.772
STPG10.772
KCND20.771
SDR16C50.771

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
HEY2-0.483
STON2-0.473
COPZ2-0.47
S100A16-0.469
MYL3-0.469
REST-0.461
ALDH3B1-0.45
YES1-0.447
RAB13-0.447
GPRC5C-0.443

Drugs/Compounds

    There is no DrugBank record for this gene !

ID Drug Name Action PubMed
D016604Aflatoxin B1Aflatoxin B1 results in decreased methylation of LINC00652 gene27153756
C006632arsenic trioxide[Tretinoin co-treated with arsenic trioxide] results in increased expression of LINC00652 mRNA15894607
C561695(+)-JQ1 compound(+)-JQ1 compound results in decreased expression of LINC00652 mRNA26752646
D010936Plant ExtractsPlant Extracts results in decreased expression of LINC00652 mRNA23557933
D014212Tretinoin[Tretinoin co-treated with arsenic trioxide] results in increased expression of LINC00652 mRNA15894607
D014635Valproic AcidValproic Acid results in decreased methylation of LINC00652 gene29154799

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal