Gene: LINC00939

400084
-
long intergenic non-protein coding RNA 939
ncRNA
12q24.32
Ensembl:ENSG00000249267
NC_000012.12
SNP Mapped
1   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
7.895e-2 (AD)  1.587e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs10847023chr12:125959974 (GRCh38.p7)T>Calcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
PKHD10.569
OR5M80.548
TPH20.547
OR4C110.545
OR14A160.53
ZFP69B0.518
TCHHL10.508
SLC13A10.507
KRTAP15-10.506
OR6C30.5

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
NTSR2-0.374
S100A1-0.37
TST-0.36
PHGDH-0.343
IZUMO4-0.341
ACAA2-0.34
FAM181A-0.336
SMOX-0.336
DPF3-0.335
ENDOU-0.329

Drugs/Compounds

    There is no DrugBank record for this gene !

ID Drug Name Action PubMed
C076994perfluorooctane sulfonic acidperfluorooctane sulfonic acid results in decreased expression of LINC00939 mRNA27153767

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal