Gene: SCGB1D4

404552
IIS
secretoglobin family 1D member 4
protein-coding
11q12.3
Ensembl:ENSG00000197745 MIM:615062 Vega:OTTHUMG00000167510 UniprotKB:Q6XE38
NC_000011.10
SNP Mapped
1   ANCO-SNPs
CD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
1.603e-1 (AD)  8.307e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs954237chr11:62297243 (GRCh38.p7)T>Ccocaine dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
SSX70.437
SPANXN40.434
SPATA31A70.427
TBPL20.426
KHDC3L0.392
KLHL310.368
OR11H60.363
TRPC5OS0.355
PLGLB20.351
CBWD30.341

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
ACER1-0.227
GDF11-0.208
MRPL30-0.198
ITGA4-0.192
MAP1LC3C-0.191
EHF-0.189
CHRNA6-0.184
PRKG2-0.184
ZNF469-0.183
HSD17B1-0.182

Drugs/Compounds

    There is no DrugBank record for this gene !

ID Drug Name Action PubMed
D016604Aflatoxin B1Aflatoxin B1 results in increased methylation of SCGB1D4 gene27153756
D000643Ammonium ChlorideAmmonium Chloride affects the expression of SCGB1D4 mRNA16483693
C006780bisphenol Abisphenol A results in decreased expression of SCGB1D4 mRNA18180321|2518105
C010902decabromobiphenyl etherdecabromobiphenyl ether results in increased expression of SCGB1D4 mRNA23914054
C015329lycopenelycopene results in decreased expression of SCGB1D4 mRNA15084515
D010936Plant ExtractsPlant Extracts results in decreased expression of SCGB1D4 mRNA23557933
D014810Vitamin EVitamin E results in decreased expression of SCGB1D4 mRNA15084515

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO:0005576extracellular region-IEA-  
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal