Gene: LINC00470

56651
C18orf2
long intergenic non-protein coding RNA 470
ncRNA
18p11.32
Ensembl:ENSG00000132204 UniprotKB:Q9BZP3
NC_000018.10
SNP Mapped
1   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
3.893e-1 (AD)  4.003e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs9950729chr18:1344119 (GRCh38.p7)T>Calcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
KIR2DS40.559
ABCB50.543
OR4D110.543
OR51S10.541
HTN10.533
CNBD10.531
KRTAP24-10.53
PRR210.528
DPPA40.527
SNTN0.525

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
NTSR2-0.268
NKAIN4-0.264
C1orf53-0.263
LHPP-0.249
HHATL-0.237
TTYH1-0.237
KIAA1755-0.237
HDAC11-0.235
SLC25A48-0.235
HES6-0.233

Drugs/Compounds

    There is no DrugBank record for this gene !

ID Drug Name Action PubMed
C018475butyraldehydebutyraldehyde results in decreased expression of LINC00470 mRNA26079696
D002117CalcitriolCalcitriol results in increased expression of LINC00470 mRNA16002434
C561695(+)-JQ1 compound(+)-JQ1 compound results in decreased expression of LINC00470 mRNA24796395
C046012pentanalpentanal results in decreased expression of LINC00470 mRNA26079696
D012822Silicon DioxideSilicon Dioxide analog results in decreased expression of LINC00470 mRNA23806026
D012822Silicon DioxideSilicon Dioxide analog results in increased expression of LINC00470 mRNA25895662

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO:0003674molecular_function-ND-  
GO ID GO Term Qualifier Evidence PubMed
GO:0008150biological_process-ND-  
GO ID GO Term Qualifier Evidence PubMed
GO:0005575cellular_component-ND-  
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal